Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq43985 419 3e-112 >seq43985 Length=4878 Score = 419 bits (464), Expect = 3e-112 Identities = 898/1332 (67%), Gaps = 74/1332 (6%) Strand=Plus/Minus Query 76857 TAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGAC 76916 || ||||| || ||| || ||| |||| | || || |||| ||||||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 76917 TGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGA 76976 ||||||||||||||||| || || | ||| || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 76977 ATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA-GGTTTGTATT--TTGA 77033 || ||||||| |||||| ||| || || | ||| | || || || ||| Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 77034 ATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCT 77093 || ||||||| || ||||||| || || ||||| |||| |||||| | || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 || | | | | | | |||| ||||||| | ||||||||| || || | ||| | ||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 | |||||||| || || ||||| | |||||||| || |||| |||||| ||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAAC----------------------TATTT-C 77250 || ||||| |||||||| || | | |||| ||||| | Sbjct 2321 GATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATTTTC 2262 Query 77251 TG-----------AGA----------CCATGTGTTCTGATTTTATCTTTTAGATATTT-C 77288 | ||| |||||| | | ||||| ||||| | ||| | Sbjct 2261 TNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCA-ATACAGAC 2203 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 |||||||| || || | ||| |||||| | ||| ||||| || ||||| || || Sbjct 2202 CAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGCTG 2143 Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 | ||| || | ||| |||||||||| || | | ||||||| | |||||| || ||| Sbjct 2142 ACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCT 2083 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCAAT 77467 || ||||| || || || || ||||| ||||| | | ||| | || | || | Sbjct 2082 TCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCTCG 2023 Query 77468 ACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 || || | || ||| | | ||| || || || ||||| || || || | ||||| || Sbjct 2022 -CTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCC 1964 Query 77528 AATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTC 77587 |||||| | |||||| ||| || | || || || || | ||||||| ||| ||||| Sbjct 1963 AATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTC 1904 Query 77588 TATAATTTTATTGAGATTTC---TAACAACTACTTTAACCACGTCCTTTA---GTTTAAG 77641 || |||||||| ||||| | | ||| | | ||||| ||||| | | |||| Sbjct 1903 GATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTTAA- 1848 Query 77642 AAAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACA 77698 |||| | || ||| |||||||||| || | || || ||||||| |||||| Sbjct 1847 --AATCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACA 1790 Query 77699 AACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 ||| || || |||| | | | || ||| | | ||| || ||||||| ||||||||||| Sbjct 1789 AACAGCCACTTCATCTGGTGCTGA-ATACTCAACTATTTCTGTACATAAATTACTACATT 1731 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 | |||||||| | ||||||||| || |||||| |||| |||| ||||| || || ||| Sbjct 1730 TAATAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATAT 1671 Query 77818 ACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTT 77876 | || || || || || | || ||||| ||||| | ||| | |||| | |||||| Sbjct 1670 ATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAA-GACTTTGTGCTTTT 1612 Query 77877 ATCATAGATTTGTATCGCCTCTCTCTT--TCATATTGAGTATATAGCCGTTCAAATTCAT 77934 | | || || ||| || |||| ||||||| |||||||| ||||||||||| Sbjct 1611 ACTTTC--TTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCAT 1554 Query 77935 CTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCAT 77994 | ||||| || |||| ||| || || || | | ||| ||||| | ||||| || ||| Sbjct 1553 CGCCCCATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCAT 1494 Query 77995 CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 78054 | | ||| ||||||||||| ||||| || ||||||| ||| ||||| ||||| | Sbjct 1493 TAGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAG 1434 Query 78055 TTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAAT 78114 |||||| ||||| | || ||||| || || | ||| | ||| || | ||||| | || Sbjct 1433 CTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCAT 1374 Query 78115 GCCATGGTTCTA 78126 |||||||||||| Sbjct 1373 GCCATGGTTCTA 1362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||||| || | ||| || || ||||| ||||| | ||| || || | |||||||| Sbjct 1056 CTGCAGCGAAAAGTGTTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTGTATG 997 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 |||||||| | | || || ||| | || || || | | ||| ||||| ||||||| Sbjct 996 TTTCAATAACAGCATCAATATCCTCTCCGTGTATACCAATGGATACGCGCATTAACATAT 937 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 |||| || | ||||| | ||| ||| | ||| | || || || ||||| |||| Sbjct 936 GCTGTGGACGCTCAACAATTTTACCATTCAGTTTAAGTAAATAAGAACGTTCCAGCGTTT 877 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 ||||||||||||| || || ||| || | || || || ||| | ||||||| Sbjct 876 TAAAACCAAAATAATTATAACCAAAATCACGATCATAGATTATAGCTGAATTTA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693461413525440