Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq43985 408 6e-109 >seq43985 Length=4878 Score = 408 bits (452), Expect = 6e-109 Identities = 1213/1874 (65%), Gaps = 109/1874 (6%) Strand=Plus/Minus Query 75452 TAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGAC 75511 || ||||| || ||| || ||| |||| | || || |||| ||||||||| | ||| Sbjct 2681 TAAAAATGTATAGATGTAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAACGAT 2622 Query 75512 TGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGA 75571 ||||||||||||||||| || || | ||| || ||||| || || | ||||| | Sbjct 2621 TGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTCACCGAT 2562 Query 75572 ATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGA 75628 || ||||||| |||||| ||| || || | ||| | |||| || ||| Sbjct 2561 ATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACCTTGT 2502 Query 75629 ATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCG 75688 || || || | | ||||||| || || || || |||| |||||| || Sbjct 2501 ATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCTTCATCCCACAAACCCAATTCA 2442 Query 75689 GTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGA 75748 || | | | | | | |||| ||||||||| ||||||||| || || | ||| | |||| Sbjct 2441 GTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACGCGTCGA 2382 Query 75749 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTT 75808 | |||||||| || || ||||| | |||||||| || |||| |||||| |||||| Sbjct 2381 TTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGTGCAGTT 2322 Query 75809 GAAGCAGTCGGCATAGGTGCCACCAATAAAC----------------------TATTT-C 75845 || ||||| |||||||| || | | |||| ||||| | Sbjct 2321 GATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCGTACGCCATATTGTTTTATTTTC 2262 Query 75846 TG-----------AGA----------CCATGTGTTCTGATTTTATCTTTTAGATATTT-C 75883 | ||| |||||| | | ||||| ||||| | ||| | Sbjct 2261 TNNNNNNAAGTAAAGAGTTGCGTACGCCATGTTGTTTTATTTTCTCTTTCA-ATACAGAC 2203 Query 75884 CAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTA 75943 |||||||| || || | |||| |||||| | ||| ||||| || ||||| ||||| Sbjct 2202 CAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTGCTG 2143 Query 75944 GCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC 76003 | ||| || | ||| ||||| ||||| || | |||||||| | ||| || || || Sbjct 2142 ACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTAGCT 2083 Query 76004 TCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAG 76062 ||||| || || || || || ||||| ||||| | | ||| |||| | || | | Sbjct 2082 TCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGCTCG 2023 Query 76063 ACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 || || | || ||| | | ||| || || || ||||| | || || | ||||| || Sbjct 2022 -CTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATGCC 1964 Query 76123 AATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATC 76182 |||||| | |||||| ||| || | | || || || | || |||| ||| || || Sbjct 1963 AATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATGTC 1904 Query 76183 TATAATTTTATTGAGATTTC---TGACAACTACTTTAACCACGTCCTTTA---GTTTGAG 76236 || |||||||| ||||| | | ||| | | ||||| ||||| | | || Sbjct 1903 GATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACC---TCCTTCAAACGCTT--- 1850 Query 76237 AAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | |||| | | | ||||||||||| || || || ||||||| |||||| Sbjct 1849 AAAATCGTACGTTTTTTCTGGTGTAACAAACATATTGAGTGCAATCGATGCTAAATTACA 1790 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||| || || |||| | | ||| | | ||| || || |||| ||||||||| || Sbjct 1789 AACAGCCACTTCATCTGGTGCTGAATACTCAACTATTTCTGTACATAAATTACTACATTT 1730 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||||| |||| ||||||||| || |||||| | ||||||| ||||| || || | | | Sbjct 1729 AATAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGTACAGCATATA 1670 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTA 76472 || || || || || | || ||||| ||||| | ||| | |||| | ||||||| Sbjct 1669 TGGTGTGCCTGTCTCTACTTGCGATTCAATAATGGCAAACCAAA-GACTTTGTGCTTTTA 1611 Query 76473 TTATAGATTTGTATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATC 76530 | | || || ||| || |||| ||||||| |||||||| |||||||||||| Sbjct 1610 CTTTC--TTATTAGCGCGTCCGTCTTGCTCATATTTAGTATATAATTTTTCAAATTCATC 1553 Query 76531 TCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATC 76590 ||||| || |||| ||| || ||||| | | |||||||| | ||||| || ||| Sbjct 1552 GCCCCATACCTCATGCAAGCCGGGACACTTGTGTGGACACATAAGCGACCAATCTTCATT 1493 Query 76591 TTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 76650 | | ||| ||||||||||| ||||| || ||||||| ||| ||||| ||||| | Sbjct 1492 AGCTTCAACACGTTTCATAAAAAGATCTGGAATCCATAATGCATAAAATAAATCTCTAGC 1433 Query 76651 TCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATG 76710 |||| | ||||| | || ||||| || || | ||| | || || | ||||| | ||| Sbjct 1432 TCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAATCCAAAAATTCAAATATATCTGCATG 1373 Query 76711 CCATGGTTCTA-----------------------------GATATATCGCCATAACACCC 76741 ||||||||||| Sbjct 1372 CCATGGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1313 Query 76742 GGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATT 76801 ||||||||| ||| || ||||||| ||| | || ||||| | || ||||||||| Sbjct 1312 GGTCGTTTACCACCGCCTTGATCTACATAACGTGCTACATTATTGAATACCCTCAACATT 1253 Query 76802 GGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT- 76860 || | | || || ||||| |||||||| || | ||| | || ||| || || Sbjct 1252 GGTACCAAACCATTCGATGTGCCATTTGTGCCCGCAATTGCTGTACCTTTTGCTCGTATG 1193 Query 76861 --AT-TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 || ||| || | || || || || || || ||| || |||| |||||| | | Sbjct 1192 CAATGTAC--ATTG--AGTCCAATACCACCAGCTGATTTGGAAATTAAAGCACATTGATG 1137 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 || | | ||||| || || ||| | ||| | | ||| ||||| || Sbjct 1136 TGCTGAGGTGAATATGCCATCAATTGAATCGGAAACCATAGTCAAAAGGAAACATGATGA 1077 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 | || | || ||| ||||| || | ||| || || ||||| || || | Sbjct 1076 TAGCTGTGGTTGTCTAGTAGCTGCAGCGAAAAGTGTTGGTGACGCATGTGTAAAATAACG 1017 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTAC 77097 ||| || || | |||||||||||||||||| || || |||||| | || || || | Sbjct 1016 TTCTGAGAGCAAATTGTATGTTTCAATAACAGCATCAATATCCTCTCCGTGTATACCAAT 957 Query 77098 AGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAA 77157 | || ||||| ||||||||||| || || || ||| | ||| ||| | ||| | || Sbjct 956 GGATACGCGCATTAACATATGCTGTGGACGCTCAACAATTTTACCATTCAGTTTAAGTAA 897 Query 77158 GTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT 77217 || || ||||| ||||||||||||||||| || || ||| || | || || || Sbjct 896 ATAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAAAATCACGATCATAGAT 837 Query 77218 AATAACCGAATTTA 77231 ||| | ||||||| Sbjct 836 TATAGCTGAATTTA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711695266542720