Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq2788 269 3e-67 seq14905 122 1e-22 seq38357 102 9e-17 seq2551 96.9 4e-15 >seq2788 Length=136445 Score = 269 bits (298), Expect = 3e-67 Identities = 374/518 (72%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 43399 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 43458 |||||||| |||||| | || ||||| || || || || ||||| | ||||||| || Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 43459 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 43515 || || | || || |||| || | || || ||||| || |||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 43516 TATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCT 43575 || ||||||| ||||| |||||||| | || ||||| | ||| || || ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 43576 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 43635 || || || ||||||||| | ||||| ||| |||||||||| || || | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 43636 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 43695 || |||||||||||||| || || || ||||| || || |||||||| || ||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 43696 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 43755 ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 43756 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 43815 ||||| |||||||| |||| || ||||| ||| | ||| | |||||||| ||||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 43816 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 43872 | | || || ||||||| |||||||||| |||||| ||| | ||||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCCGTCTGACG-TGC-----CTGGCCTG 19201 Query 43873 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 43910 || || || |||| || || |||||| |||||||| Sbjct 19200 TACGACGCGTTCT-TC--GCCGATCAGGACGAGTTCGA 19166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 45178 TTCGAAACTTTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 45237 ||||||| ||| ||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 17781 TTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAAGTTGACGTT 17722 Query 45238 TCGATCGACCGTATGCAGTATGCA-AAAATGCCGGAACACGAGAAAATCATTTT--TGAT 45294 | |||||||| | | | || ||||||| || || ||| |||||| ||| Sbjct 17721 GCCCGTGACCGTATCGACT-TCCAGGGTCTGCCGGAGCATGAAAAACACATTTTCCTGA- 17664 Query 45295 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 45354 |||||| | ||||| || ||| | || | |||||||| ||| |||||||| ||||| Sbjct 17663 -GCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAGCCCTAACGTGGCG 17605 Query 45355 TTTCTCCCG 45363 | || ||| Sbjct 17604 CTACTGCCG 17596 >seq14905 Length=119551 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 53395 GAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGT 53454 ||| |||| || || ||| || ||||| || ||||| || ||||| || || | ||| Sbjct 42253 GAGATTCAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGT 42312 Query 53455 CGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGC 53514 || || || || |||||||| | ||||||||||||||||| || ||||| || ||||| Sbjct 42313 CGTGAGACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGT 42372 Query 53515 GTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATC 53574 || || || || || || || ||||| | |||| || ||||| |||| ||||| ||| Sbjct 42373 GTCTCGGGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATC 42432 Query 53575 GCCAGAACCTTTACGGAAAGCATGTAA 53601 | | || || || | ||| ||||| Sbjct 42433 ACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq38357 Length=36386 Score = 102 bits (112), Expect = 9e-17 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 155822 AACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 155880 || || ||||| || || ||| |||| | ||||| ||||||||||| ||| ||||||| Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 155881 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 155940 || ||||||||||||| || ||| | || ||||| || || | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 155941 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCG-TTCACGCCATACACAA 155999 || || || || |||||||| ||||| || ||| ||| || | | || | | Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTC-A 27259 Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059 ||||| || | || | ||||| ||| || ||| || || || ||||| ||||| | Sbjct 27260 ACTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGG 27319 Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119 | ||||| | ||||| || ||| ||||| || | | ||||||||| | ||| | Sbjct 27320 AAATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTC 27379 Query 156120 AGATTGC 156126 || |||| Sbjct 27380 AGGTTGC 27386 >seq2551 Length=53185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 53419 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 53478 ||||| || ||||| || ||||| || || | ||||| | ||| || || || Sbjct 36934 GAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATG 36993 Query 53479 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 53538 || |||||||||| | ||| ||| | || |||||||||||||| ||||| || ||||| Sbjct 36994 GAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTC 37053 Query 53539 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 53598 || |||| || |||||| |||| ||||| || || | |||||||| ||| || Sbjct 37054 AACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACTAAAACGCTG 37113 Query 53599 TAA 53601 ||| Sbjct 37114 TAA 37116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575570673230640