Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031081.1 Length=45206 Score E Sequences producing significant alignments: (Bits) Value seq139038 295 2e-75 >seq139038 Length=11747 Score = 295 bits (326), Expect = 2e-75 Identities = 919/1387 (66%), Gaps = 68/1387 (5%) Strand=Plus/Plus Query 5007 CGCTGCAATATTTGGGCGACAATGGGGTCGGGTAAAACCGGCGCGACCATGTGGGCGCTG 5066 ||||||||| | | || || ||||| || ||||||||||| || |||||||||| Sbjct 9540 CGCTGCAATCTATACGCCACGATGGGTAGTGGCAAAACCGGCGCCACACTGTGGGCGCTA 9599 Query 5067 AATAAAATGTTCCAGACTGGCGTCCT--GTCCCATCATGAGGACCGCGTACTGGTGCTGG 5124 || | |||||| ||| |||| || | |||| | || ||||| || ||||| | Sbjct 9600 AACCAGATGTTCAAGAGCGGCGAACTCGGGCCCA-----AAGATCGCGTCCTTGTGCTCG 9654 Query 5125 CCCCGCTGCGTGTTGCGTCGGGTACATGGCCACCGGAACAGGAGAAATGGCGATTCTCAT 5184 | |||||||| |||||||| | || ||||| || || || |||||| | || | Sbjct 9655 CGCCGCTGCGCGTTGCGTCCGCGACGTGGCCCGGAGAGCAAGACAAATGGGGGTTTCCCG 9714 Query 5185 CCCTGCTGGTCGTAGACGGCACCGGGCCGGAGAAGGACCGTATTGCGGCG-------CTT 5237 | |||| ||||| |||||||||||||| || | | ||| |||| || Sbjct 9715 CACTGCAAGTCGTCGACGGCACCGGGCC-----AGTAGCCTAT--CGGCAACAAGTACTC 9767 Query 5238 GAGAGCGACGCTAACGTGGTTTGTGTTAACTACGATGTGGTTGAGTGGCTGGTCGACTAT 5297 | | | | ||||||||| ||| |||||||||| | | || ||| |||| | || Sbjct 9768 GCCGGTAAGGATAACGTGGTGTGTTGTAACTACGATATCGCAGAATGGTTGGTGCAATAC 9827 Query 5298 TACGGCGATGCGTGGCCCTTTACGGTCGTTGTTGCCGATGAATCGACTAAGCTGAAAGGC 5357 || || | ||||||||||| || || |||||||| |||||||| ||||| || | | Sbjct 9828 CTTGGTGACGATTGGCCCTTTACCGTTGTCGTTGCCGACGAATCGACAAAGCTTAA-GTC 9886 Query 5358 TATCGTAGCAAGCAGGGGAGC-AAGCGCGCCCGCGCACT-GGCAGCGATTGCACATAAAC 5415 || | | | | || | || |||||||| || || |||| || || ||||| Sbjct 9887 GTTCCGAACGCGTGGCGGGTCTAAACGCGCCCGTGCTCTTGGCAAA-ATCGCCCATAAGA 9945 Query 5416 A------CGTCAAGCGCTGG-ATT-----AACCTTACCGGCACACCAGCGCCAAACGGGC 5463 | |||||| | || ||| ||| | || || || || || ||||||||| Sbjct 9946 AAAAAGGCGTCAAAGTCCGGTATTGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGC 10005 Query 5464 TAAAAGACTTATGGGGTCAGACGTGGTTTGTCGACGGTGGCGAACGCCTCGGCAGTAGCT 5523 | || || | |||||||||| |||||| | || | ||||| || || |||| | || Sbjct 10006 TCAAGGATCTTTGGGGTCAGAACTGGTTTATAGATGCTGGCGCGCGTCTGGGCAC-ATCT 10064 Query 5524 ATAAG-GCATTTACCGACCGCTGGTTCATTAGCAAGCCTGTTAAGCCTGGCAGCTTCACT 5582 | | || || | ||||| | |||| |||| ||||| | |||| | | Sbjct 10065 TTCACCGCGTTCAAAGACCGGTATTTCACCTCGAAGCAAA--AAGCC-GACAGCA--AAT 10119 Query 5583 ATGCAGCACGCTCCGCTAAAGAACTCCGAGA----AAGAGATACAACAACGTC---TGTC 5635 | || | | | | | | | |||||| || || ||| ||| || | Sbjct 10120 ACGCCGTAGAC--CTCATACCCATGCCGAGATCAGAACAGCGCATACATCGTGCATTGGC 10177 Query 5636 AGATGTATCCCTCACCGTTGACGCGGCTGAATACTTCGGGTGCGACAAGCCAATCTATAC 5695 || | || || || || |||||| || |||||||||| || || || | || | || Sbjct 10178 CGACATCTCGCTGACGGTAGACGCGTCTAAATACTTCGGTTGTGAAGAGGCGAT-TGTAG 10236 Query 5696 G-CCGGTTGTTGTGGACCTGCCGAAGAAAGCGCGCAAGATTTATGACCAGTTTGA-AAGC 5753 ||| | || ||||||| ||||||| || | |||||| | | | |||| Sbjct 10237 TTCCGCGTCCGGTCTACCTGCCCCGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGC 10296 Query 5754 GAGCTATTTGCAGAACTGGAA-AGCGGAACAGTGGAAGCGGCGAACGCGGCGTCGAAGAC 5812 ||| || || || || || |||| ||| || || | || |||||| | ||||| Sbjct 10297 T-GCTGAAGGCCGATCTCGATGAGGGGAA-AGTCGACGCCGTTAATGCGGCGGCCAAGAC 10354 Query 5813 AATTAAGTGCCTTCAGCTTGCATCCGGCGCTGTGTATAAGGTGGACGAAGACGGCGAACG 5872 ||| ||| | ||| | || ||||| || || ||| | |||| ||||| || | Sbjct 10355 GGCTAAATGCTTGCAGATAGCTTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCC 10414 Query 5873 GACCGACGAGTGGGTGAAGATTCACGACGCGAAGCTGGACGCGCTGGAAAGTATTGTGGA 5932 ||| | || |||| | ||||| ||| ||||||||||||||| || |||| || Sbjct 10415 GACAGGTGACTGGGAGCTTATTCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGA 10474 Query 5933 GGAGTTGAACGGAGCGCCGTTGCTCGTTGCGTATCAGTATAAGCATGACCTGGCACGTCT 5992 ||| | ||||| ||||| || | || || ||| | ||| ||||||| || ||| | Sbjct 10475 AGAGCTCAACGGTGCGCCACTGTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCAT 10534 Query 5993 TAAGAAGAAATTTCCGCACGGCGTTGCGTTGGGTAAAGGTAAGCAGGGCAATAAGGA-TA 6051 ||||||||| || | | ||| || |||| |||||||| | |||| | | || Sbjct 10535 CCTGAAGAAATTCCCCGAGGCCGTGGCACTGGGCAAAGGTAAA-ACCGCAACCCGCAATA 10593 Query 6052 TGGAAGCATGGAACAGGGGCGAGATCCCCATCATGTTTGCACACCCGGC-ATCGGCGGGC 6110 | || |||||| || ||||||| || | || || |||||||| | || ||||| Sbjct 10594 TCGAGCTGTGGAACCAAGGGAAGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGGC 10653 Query 6111 CACGGCCTTAACTTGCAGGACGGCGGTCATCACCTGGCAATCTTCTCCGATACCTGGAAC 6170 |||||||||||||||| |||||||| || || ||||| | || ||||| |||||| Sbjct 10654 -ACGGCCTTAACTTGCAAGACGGCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAAC 10712 Query 6171 TTTGAGCACTTTTCGCAGATCGTTGAGCGTATCGGGCCGGTTCGCCAGATGCAGGCCGGG 6230 || || ||| |||||||||||| || || || ||||| || || || ||||| || Sbjct 10713 TTGGAATACTATTCGCAGATCGTCGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGC 10772 Query 6231 CACCCTCGACCGGTATTCGTCTACATTATCCAGGCGCGCGGGACACTGGACGAACTGGTC 6290 || || || || || || || | | | || ||||| ||| || || |||||| | ||| Sbjct 10773 CATCCACGGCCAGTTTTTGTGTTCTTGATACAGGCTGCCGGTACGCTCGACGAAGTCGTC 10832 Query 6291 GCGGAGCGTCGCGAC-AGTAAGCGAGACA-TTCAGGACGATTTAATGGAATACAT-GAAA 6347 |||||||| || ||| ||||| || || |||| || |||||| ||||| |||| Sbjct 10833 GCGGAGCGCCG-GACGGGTAAG-AAGTCAGTTCAAGATCTCCTAATGGCTTACATGGAAA 10890 Query 6348 GCTAAAA 6354 | |||| Sbjct 10891 GGGAAAA 10897 Score = 224 bits (248), Expect = 3e-54 Identities = 492/729 (67%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 40249 ACCTTGCACTTGAGCAGGACGAAGCCACGCGGCGCTTGCTTGATGCCGTTACGTGCTTTT 40308 || || || || |||| | |||||| | |||| |||||| | ||||||||| | |||| Sbjct 531 ACTTTACATTTTCGCAGCAGGAAGCCCCTTGGCGATTGCTTCACGCCGTTACGGGATTTT 590 Query 40309 TCGTGATACAGGTTCAATTGGCCTGGCTGGTTGTCG-TCCGGCTGTTCAAGGAAGAAAGC 40367 |||||||| || || | || || || || | | || ||||| || | || || || Sbjct 591 TCGTGATAAAGATTGATTTTACCCAT-TGATTCTGGATCAGGCTGCTCGATAAAAAAGGC 649 Query 40368 AGAATCGACAGCACCATGAAGCGCGCCGGATCCGCGTGGCGTTCGGCTTCCGTTTGCACC 40427 ||||| || |||||||| ||||||||||| ||||| | | || || | || Sbjct 650 CGAATCCACTGCACCATGCAGCGCGCCGGAACCGCGCGCAGAGCGTGACGCGCCACCCCC 709 Query 40428 CTTAGCCGGGTGGTGGATGACGCCCGCACTGCCACCTGTATTTTCCGCGATGGCCTTCAG 40487 || |||||||| || | |||||| || || || || | ||| | ||||| Sbjct 710 TTTTGCCGGGTGATGAACGACGCCAGCCGATCCGCCGGTTGCGATAGAGATCTCTTTCAG 769 Query 40488 CGCTTTGACCACTTCGCCCATATCGCTGGCGTTGTTCTCGTCGAACGGTTTTGCATCGGC 40547 || |||||||| |||||||| ||| | ||||| |||||||| |||| Sbjct 770 GGCGCGTACCACTTCCCCCATATCTGCCGCGCTATTCTCATCGAACGGCCGAAGGTCGGA 829 Query 40548 GGACCGCAGCGCAACAGTCTGGTTGAGTGAGTCGAACGCCACCAGGCCAACCGGCTCGCC 40607 || || | || | ||||||||| || |||||||| || | || |||||| || || | Sbjct 830 AGAGCGTAAAGCCATAGTCTGGTTTAGAGAGTCGAAGGCTATCATGCCAACAGGATCTTC 889 Query 40608 ----GTTAGCGGTGCGGTTGATGAAGCTGATAACTTCACGCAAGCCGGATTTGCTGGTGA 40663 | || || ||||| ||| || | | || ||| ||||| || | | || Sbjct 890 ACGGGCTATCG-TGCGG---ATGTAGTCGGTCACCCGGCGCTTGCCGGTCTTTGTTGAGA 945 Query 40664 TATCCCAGCCTCGTGATTGCAGATCGATAATGTGCAGCTTGTCCAGGTCGTGCTCATATT 40723 | |||||||| | || |||| ||||||||| | ||||| | | ||| | Sbjct 946 TGTCCCAGCCCAATACCGAGAGGTCGACTATGTGCAGCCAATTGAGGTCATCTTGATACT 1005 Query 40724 TAATCTGCAATGC----TTCCTTACGCTGGTTAGAGGCTTCGCCACCTTCCGCGTCGAAA 40779 | ||||| | || ||||||| | | ||| ||||||||||| || |||| | Sbjct 1006 TTATCTGGAGCGCCTGTTTCCTTAAG----TGAGAACTCTCGCCACCTTCGGCATCGAGA 1061 Query 40780 TAGAAGCAATGAGACTGGACGACCTTC-GCACCGCCGAACGGAATACCGGCGGCAACCGC 40838 |||||||||||||| | || |||||| || ||| | || || || || ||||| || || Sbjct 1062 TAGAAGCAATGAGATTTGATAACCTTCTGCCCCG-CAAAAGGTATGCCAGCGGCGACAGC 1120 Query 40839 GCCCATTTGGCCCAGCACATAGAACGATTTACCGATGTTCGACTCGCCCGCCATATACCA 40898 | |||| || || || |||||||||| || ||||| || ||||||||| ||||| Sbjct 1121 GGCCATAGCCCCAAGGACGAAGAACGATTTGCCTATGTTTGATTCGCCCGCCGCGTACCA 1180 Query 40899 GGTCGATTTAAAGTTAATCAACCCCTCGATGATCGGGTCGTGCTTACTGAACAGCGCAAC 40958 |||||| ||||| | ||||| || |||||||| ||| |||| |||||| ||| Sbjct 1181 CGTCGATCGGAAGTTTAAAAACCCATCAATGATCGGCACGTTCTTAGTGAACAAGGCAGA 1240 Query 40959 CGGCTCGTT 40967 ||| || || Sbjct 1241 CGGTTCATT 1249 Score = 196 bits (216), Expect = 1e-45 Identities = 430/640 (67%), Gaps = 16/640 (3%) Strand=Plus/Plus Query 1621 GCGAAGGATAAAGCAGGCAAGGCGCTGATTAAGCGATTCTGTAAGCCAACGCCGAAGACT 1680 || || ||||| || || |||||| |||| |||| |||||||| || ||||| |||| | Sbjct 7098 GCCAAAGATAAGGCGGGTAAGGCGTTGATCCAGCGCTTCTGTAAACCCACGCCTAAGAAT 7157 Query 1681 TACAAGGTCCGCCGCTATACCCGCGAGACTCACCCGGAAGAGTGGGCCAAA---TTCCTC 1737 |||||| | || ||||| || |||| ||||| ||||| ||| ||| || | Sbjct 7158 TACAAGATACGGCGCTACACAAAGCAGACGCACCCCGAAGAATGG---AAACGCTTTGTA 7214 Query 1738 AAGTATGCGAAATACGACATCATCGCAATGCGTGAAGTGTACTGGCGTATCCCGGATTGG 1797 | || || ||| |||| | |||||||| | | || || | || ||| Sbjct 7215 GACTACGCACGGCGCGATATCACTTCTATGCGTGAGGCCTTCTACCGACTGCCAACATGG 7274 Query 1798 GGTAATACTCCGAAG---GAAGACCAGATACTGGCAATTGACCAGTTGATCAATGACCGC 1854 || | || || ||| ||| ||| | | |||||||| | || |||||||| Sbjct 7275 ---AACTCCACGGAGATTGAAAACCGGATCTTAGTGCTTGACCAGATCATTAATGACCGA 7331 Query 1855 GGATTCTACGTGGATACCAAACTGGCCTACGCCGCTATTAAAGCCGTGGAAGCGCACAAA 1914 || || ||||| |||||| | || || ||| | | ||| | | | ||| || Sbjct 7332 GGGTTTTACGTCGATACCGAGCTTGCTCGTTGCGCGGTACAGGCCATACAGGAGCATAAG 7391 Query 1915 GAAGAACTGAAAGAAGAGGCTATGGAGAAGTTTGGCGGTAAG--CTAACCGGCAACGACT 1972 ||||||| |||| |||||||||| || | ||| | || || ||||| || | Sbjct 7392 AAAGAACTTAAAGCCGAGGCTATGGCCAAATACGGC--TCAGGTCTTACCGGTGCGGATT 7449 Query 1973 TCCTGCCATTGCTGCGCGATATTGCTCCGGCTTTCACTATCCATAATGCGCAGAAATCCA 2032 ||||||| |||||| | | || ||||| ||| | | ||||| ||||| | Sbjct 7450 TCCTGCCGGCATTGCGCGGTCTAGCCCCGGCGCACACCGTACCGAATGCCCAGAAGGCGG 7509 Query 2033 CGCTGCACGACCTTCTTGCGGATCCTGACTTCCCGGATGAGGGCAAAGTGCTGATTGAAA 2092 ||| ||||| || | ||||| || |||| || || | | || | ||||||| Sbjct 7510 TCTTGCTGGACCTGCTAGAAGATCCAGATCTCCCAGACGAAGCCCGCGTTATCATTGAAA 7569 Query 2093 TGCGCCTCGGTGCGTCATCAACGGCATCGACCAAATACAATCCGCTCGTTAATGGCCTAT 2152 |||||||||| || | |||||||||||||| |||||||| || || | | || || | Sbjct 7570 TGCGCCTCGGCGCAGCGTCAACGGCATCGACAAAATACAAGCCACTTATCGAGGGTCTGT 7629 Query 2153 CCGCCGATGGTCGCCGCCGTGGGTGTCTTCAGTATGGTGGTGCAAAGCGCACGCTGCGCT 2212 ||||||| || || ||||| || |||||||| |||||||| || ||||| || || | | Sbjct 7630 CCGCCGACGGCCGGCGCCGGGGTTGTCTTCAATATGGTGGCGCCAAGCGAACCCTAAGAT 7689 Query 2213 GGGCAGGTAAAGGTTTCCAACCTCAAAACCTGGCACGCGG 2252 |||| || ||| || ||||| || || || ||||| || Sbjct 7690 GGGCTGGGCGAGGCTTTCAACCGCAGAATCTTGCACGTGG 7729 Score = 131 bits (144), Expect = 5e-26 Identities = 262/384 (68%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 490 AAGTGGATGGACCGCCACTACGCCCAGGATTCTAAGGAATGCGCAGTTCGCGACGGTGAC 549 || ||| | |||||||| |||| ||||| ||||| || ||| || |||||||||||| Sbjct 5307 AAATGGTTTGACCGCCATTACGGACAGGACTCTAAAGAGTGCTGTGTGCGCGACGGTGAC 5366 Query 550 GAGCGCGACGAAGTAACCGAAGAATTCGAAGGCATGTTGTACATCAACGCCAAATCGTTC 609 ||||||| ||| || ||||| |||| | ||| |||||| || || ||| Sbjct 5367 CAGCGCGAAGAACCAAGTCCTGAATTTGAAGACGCTTTGATCATCAATGCTAAGCGCTTC 5426 Query 610 AAACAGCCGATCATCCAGACTTCCGAAGGCGAGAAGCAGACGGAGCAGGGTCTGACCATC 669 || ||||||| ||| ||||| ||||| ||||||| || || ||||| ||| Sbjct 5427 AAGCAGCCGAGGATCTTAACTTCAACGGGCGAAGAGCAGACCGAATCTGGCCTGACTATC 5486 Query 670 GACGGCGACGAAATCGAAGGGAAGGAAATCTATTCCGGTTGCTATTGC-AACGTTTCCTT 728 ||| || || |||||||| | ||| | ||| ||| ||| || || ||||| || | Sbjct 5487 GACAATGATGAGATCGAAGGTGACGAAGTTTATAGCGGCTGC-ATGGCGAACGTCTCTGT 5545 Query 729 AGATATTTGGGCCTGGAACAATACCAACGGCAAAGGCTTAGGCTGTGGTCTGCTGGGTAT 788 | | ||||| ||| | || |||||||||||| | ||||| | || || || | Sbjct 5546 AAGCTTCTGGGCATGGGATAACGAGAACGGCAAAGGCCTTGGCTGCGAACTTCTCGGCGT 5605 Query 789 GCGCTTCCGTGATGACGGCGAAGCCTTCGGCGGTGGCGGGTCT-----TCATG-TTCCGA 842 || |||||||| || | || || ||| ||||| ||| |||| ||| Sbjct 5606 CCGTTTCCGTGAAGATGCGCCTGCGTTTGGC---GGCGGTTCTACGGAGCATGCGAACGA 5662 Query 843 CGAAGACCTGGGCGACGATGACGA 866 ||| ||||| ||||||||||| || Sbjct 5663 CGATGACCTCGGCGACGATGAGGA 5686 Score = 80.6 bits (88), Expect = 8e-11 Identities = 171/255 (67%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 2641 TTGGGACTGGGCTATGGTGGCGGCGTTGCGGCGTTCTTGCAGTTCGCTAAAAACCTGGGC 2700 ||||| | || |||||||| || || || ||||||| ||| || |||| | || Sbjct 8073 TTGGGGTTAGGGTATGGTGGAGGGGTAGCCGCGTTCTGTACGTTTGCAAAAACGGTAAGC 8132 Query 2701 CTCGACCTTTACACTATGGCGGACGTGATGAAAGGCACGTTCCCGGATCACATTTGGGCG 2760 |||||||| | | ||| | || | | ||| || ||||||||||| || |||||| Sbjct 8133 CTCGACCTGTTGGCGATGACCGAGCTTTTAGCAGGTACTTTCCCGGATCATATCTGGGCG 8192 Query 2761 GCGGCGAAACGCGGCTATGAGTACGCCCGCATTAACGAAGCGAAGCGCCCGCCGAAGCCT 2820 || ||| || || | ||| ||||| || || | || |||||| ||| || Sbjct 8193 GCTGCGCGCCGTGGATTTGAATACGCACGTATCCAAGAGGCGAAGAAAAAGCCTAAAAAG 8252 Query 2821 GGTAA---GAAAGACGAGCGCCCAACTTACATACTGCCGAAAAACGTATGGCTGACGTGC 2877 ||| | |||| ||| | ||| ||||| || || ||||| |||||| |||| ||| Sbjct 8253 GGTCAACTCAAAGCCGACAGGCCATCTTACGACCTCCCTAAAAAAGTATGGATGACCTGC 8312 Query 2878 GACGCGATCAAACGT 2892 || || | || ||| Sbjct 8313 GATTCGCTTAAGCGT 8327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144298943670336