Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2788 226 3e-54 seq2551 132 5e-26 seq14905 127 2e-24 >seq2788 Length=136445 Score = 226 bits (250), Expect = 3e-54 Identities = 347/492 (71%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || || ||||||||||||| | |||| || ||| | | |||||| || || ||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || ||||| || || | ||||||| ||||| | || ||||| |||||| || || Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || || ||| |||||||||||| |||||| || || ||| |||| ||||| || || || Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 || || || || || |||||||||||||| || || |||||||| || |||| || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 141441 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCT 141500 || ||||| |||||||| | ||| |||| || || || ||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 141501 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCT-TC 141559 || || || || |||||||| |||| | ||||||| | || || | || | | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCGC 19578 Query 141560 GTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGT 141619 ||| || || | || || || || | || || | ||||| || ||||||||||| || Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 141620 CGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 141679 ||| || || || || ||||||||||| || |||| |||||||| || ||||| || Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 141680 ATCATAGAAACG 141691 |||||||||||| Sbjct 19699 ATCATAGAAACG 19710 >seq2551 Length=53185 Score = 132 bits (146), Expect = 5e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60003 GTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACC 60062 || || ||||||| || ||||| ||||||||||| || || ||||| ||||| ||| Sbjct 37103 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGAGTTGAAGCGTACC 37044 Query 60063 GCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCC 60122 || ||||| ||||| || || || ||||| ||| |||| || |||| || | || ||| Sbjct 37043 GCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATTTTCCATGGCCTCC 36984 Query 60123 AGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 60175 ||||| | ||||| || |||||||||||||| |||||||||||||| || Sbjct 36983 AGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCCTTCGAT 36931 >seq14905 Length=119551 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 60003 GTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACC 60062 ||||||||||| | ||| ||||| |||||||||| || |||| |||||||| ||||| Sbjct 42446 GTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGAGTTAAAACGCACG 42387 Query 60063 GCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCC 60122 ||||| || || ||||| || || | ||| || || || || ||||| | | ||| || Sbjct 42386 GCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATGTTTTATCGCATCT 42327 Query 60123 AGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTTTACC 60182 || || || ||||||| ||||||||||| || ||||| || ||||| | ||| Sbjct 42326 TCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCCTTCTACGCGAACC 42267 Query 60183 GTTGGCTG 60190 |||||||| Sbjct 42266 GTTGGCTG 42259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537406720533120