Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq14905 149 7e-31 seq2788 136 4e-27 seq2551 82.4 8e-11 >seq14905 Length=119551 Score = 149 bits (164), Expect = 7e-31 Identities = 141/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || || || || || |||||||| || |||||||||| || || |||||||| | || Sbjct 42280 GGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAAGATGCGATAAAA 42339 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| || || ||||| |||||||| |||||||| || || || || || || |||||| Sbjct 42340 CATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCCGTGCGTTTTAAC 42399 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 || |||| ||||||||||||| ||||| ||| ||||||| || ||| |||| || ||| Sbjct 42400 TCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq2788 Length=136445 Score = 136 bits (150), Expect = 4e-27 Identities = 299/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 61754 ||||| |||||||| ||||| || | ||||| |||| ||||||| ||||||||| | || Sbjct 19710 CGTTTCTATGATGCGGTTTCAAC-CTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGG 19652 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | || || ||||||||||||||| ||| ||| | || || ||| || | Sbjct 19651 CGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCT 19592 Query 61815 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 61873 | || || ||| || || ||| || | | |||| |||| | || || |||| Sbjct 19591 GGACTCCATCAACGCGACCTCCAGCGCCA-TCGTGAAATACGTTTCACAGCGCGCAGGTA 19533 Query 61874 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAG--T 61931 | || ||||||| ||| | ||||| ||| ||| | || |||| | Sbjct 19532 TCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCAT 19473 Query 61932 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 61991 || ||||| || ||| || |||| || || ||||| || || || ||||| || || Sbjct 19472 TC--CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTC 19415 Query 61992 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 62051 ||| || || | || || |||||||| || || || |||||||||||| | ||||| Sbjct 19414 TCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGT 19355 Query 62052 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 62111 || | ||| | ||||||||||| ||| || || || | ||||| |||| || || Sbjct 19354 TGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACAT 19295 Query 62112 GGACTACGGAATTCAGATTAA 62132 ||||||||| | ||||| || Sbjct 19294 GGACTACGGCGTGCAGATCAA 19274 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 62892 CTGTGACTGGGAAGAACTTCGAGCTGAACTCAAAGAACATGGAATTCGTAACTCAACGTT 62951 || ||||||||||| || || || | ||||| || || | |||||||| ||| | Sbjct 18436 CTATGACTGGGAAGCGCTGCGCGCCAGCATTAAAGAGCACGGCCTGCGTAACTCCACGCT 18377 Query 62952 GTCTGCACTCATGCCTTGTGAGTCAAGCAGT---CAAGTATCTAACTCTACAAACGGGAT 63008 |||||| || ||||| | ||| || | | || | || ||| | || ||||| || Sbjct 18376 GTCTGCGCTGATGCCGTCTGA---AACCTCTTCGCAGATTTCAAACGCCACCAACGGTAT 18320 Query 63009 TGAACCGCCGCGTGGTCCAGTGAGTATTAAAGAATCTAAAGAAGGCAACTTCCGTCAGGT 63068 |||||| ||||| || | ||||| || || | |||||||| || | | | |||||||| Sbjct 18319 TGAACCACCGCGCGGCCACGTGAGCATCAAGGCGTCTAAAGACGGTATCCTGCGTCAGGT 18260 Query 63069 TGTTCCT 63075 ||| ||| Sbjct 18259 TGTGCCT 18253 >seq2551 Length=53185 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| || ||||||||||| || || || || | ||| || || | | Sbjct 36937 GGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATGGAA 36996 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 |||| || |||| || ||| |||| ||||| || || || ||||| || ||||| ||| Sbjct 36997 AATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTCAAC 37056 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACT 142708 || || || |||||||||| ||||| || | |||||||||||| Sbjct 37057 TCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACT 37104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541716017610960