Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq2788 205 1e-47 seq14905 132 5e-26 seq2551 127 2e-24 >seq2788 Length=136445 Score = 205 bits (226), Expect = 1e-47 Identities = 340/491 (69%), Gaps = 0/491 (0%) Strand=Plus/Minus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 |||||||||||||| ||||| || |||||||| |||| || ||||||||||| || Sbjct 19710 CGTTTCTATGATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGGC 19651 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || || || || || ||||||||||| || |||||| | || || | || || || || Sbjct 19650 GTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCTG 19591 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATT 136534 | || || |||| || | | || ||||||| || |||| || ||||| Sbjct 19590 GACTCCATCAACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGCGCAGGTATC 19531 Query 136535 GGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAG 136594 || || || || || || ||||| || ||| | |||||||| Sbjct 19530 GGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCATTC 19471 Query 136595 CATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAA 136654 ||||| || ||| || |||| || |||||||| || || ||||| || ||||| || Sbjct 19470 CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTCTCAG 19411 Query 136655 GGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAA 136714 ||||| || || || ||||| || || |||| || |||||||||||| ||||||||||| Sbjct 19410 GGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGTTGAA 19351 Query 136715 AACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGAT 136774 | ||| || || || || |||||| ||||| || | ||||| |||| || | || Sbjct 19350 AGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACATGGAC 19291 Query 136775 TATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATTACATCACT 136834 || || || ||||| || || |||||| | | ||| || |||| | |||||||| Sbjct 19290 TACGGCGTGCAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGGCGACATCACT 19231 Query 136835 CTGTTTAGTCC 136845 ||||| || || Sbjct 19230 CTGTTCAGCCC 19220 >seq14905 Length=119551 Score = 132 bits (146), Expect = 5e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47287 CAGCCAACGGTAAAAATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAA 47346 ||||||||||| | ||||| || ||||| || ||||||||||| ||||||| || Sbjct 42259 CAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAG 42318 Query 47347 ACCTTGCTGGATGCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCC 47406 || | |||||| | | || || || || || || ||| ||||||| || || || Sbjct 42319 ACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCG 42378 Query 47407 GGATACGCGGTGCGCTTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGT 47466 || ||||| ||||| || ||||| ||||| || |||||||||| ||||| ||| ||||| Sbjct 42379 GGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGT 42438 Query 47467 ACTTTCAC 47474 |||||||| Sbjct 42439 ACTTTCAC 42446 >seq2551 Length=53185 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 || |||||||||||||| |||||||||||||| || ||||| | ||||||| || Sbjct 36931 ATCGAAGGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCC 36990 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || | || || |||| ||| ||||||||||| |||||||| || || ||||| ||| Sbjct 36991 ATGGAAAATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGC 37050 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 |||||||| | || ||||||||||| ||||| || | ||||| || || Sbjct 37051 TTCAACTCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTAC 37103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538959217478880