Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq14905 156 4e-33 seq2788 118 1e-21 seq2551 105 7e-18 >seq14905 Length=119551 Score = 156 bits (172), Expect = 4e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 60307 TTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60366 |||||| |||| ||| || ||||||| ||| ||||| ||||||||||||| |||| || Sbjct 42459 TTACAGGCTCTGAGTGAAAGTACGAGTGATCACGTCCTGCTGCTGTTCCGGCGTCAACGA 42400 Query 60367 GTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGATG 60426 |||||| || || || || || || || ||||| |||| ||| ||||| || || ||||| Sbjct 42399 GTTAAAACGCACGGCGTACCCCGAGACACGGATAGTCAACTGAGGATACTTCTCAGGATG 42340 Query 60427 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60486 || | |||||||| || || |||||||||| ||||||||||| || || || || || Sbjct 42339 TTTTATCGCATCTTCGAGCGTCTCACGACGCATGACGTTAACGTTAAGATGCTGCCCCCC 42280 Query 60487 TTCAATTTTAACTGTAGGCTG 60507 ||| | ||| || ||||| Sbjct 42279 TTCTACGCGAACCGTTGGCTG 42259 >seq2788 Length=136445 Score = 118 bits (130), Expect = 1e-21 Identities = 287/432 (66%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 138416 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138475 || ||||| || ||||| ||||||| ||||| |||| || || ||| ||||||| | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 138476 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138535 || || || |||||||||||| ||||| || || || | || ||||| ||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 138536 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138595 || | || ||||| ||||| |||||||| || ||||| || || || | || || ||| Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 138596 ACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATCATACCA 138655 || ||||| | ||||||| | |||| ||| ||||| || ||| Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 138656 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCT-TT 138714 |||| || || || || ||||| | || | |||| || | || || | || | Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCGC 19578 Query 138715 GTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTGCCGAGT 138774 ||| || || | ||| || || || || | ||||| || || ||||| ||||| Sbjct 19579 GTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGT 19638 Query 138775 TGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACCGC 138834 || || || || | |||||| || || || | ||||||| || || ||||| Sbjct 19639 CGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGC 19698 Query 138835 TTCATAAAAACG 138846 ||||| ||||| Sbjct 19699 ATCATAGAAACG 19710 >seq2551 Length=53185 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 60307 TTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60366 |||||| | | |||||||||||| | || ||||| |||||||||| || || || Sbjct 37116 TTACAGCGTTTTAGTAAAGGTACGGGTAATCACGTCCTGCTGCTGTTCTTTGGTTAGTGA 37057 Query 60367 GTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGATG 60426 ||| ||||| || ||||| || || |||||||| |||||||| || |||| || |||| Sbjct 37056 GTTGAAGCGTACCGCATAGCCTGAAACGCGGATAGTCAGCTGAGGGAATTTCTCAGGATT 36997 Query 60427 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60486 | | || || ||| | || || || |||||||||||||| || ||||| || Sbjct 36996 TTCCATGGCCTCCAGCAGCATCTCGCGGTTCATTACGTTAACGTTCAGATGCTGACCGCC 36937 Query 60487 TTCAAT 60492 ||| || Sbjct 36936 TTCGAT 36931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529420625133120