Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031113.1 Length=44513 Score E Sequences producing significant alignments: (Bits) Value seq139038 297 5e-76 >seq139038 Length=11747 Score = 297 bits (328), Expect = 5e-76 Identities = 878/1323 (66%), Gaps = 47/1323 (4%) Strand=Plus/Minus Query 3769 CGACGCTCGGCGACCAGTTCGTCCAGTGTTCCGCGCGCCTGGATAATGTAGACGAATACC 3828 || ||||| ||||| | |||||| || || ||| ||||| || | | | || || || Sbjct 10843 CGGCGCTCCGCGACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACT 10784 Query 3829 GGTCGAGGGTGCCCGGCCTGCATCTGGCGAACCGGCCCGATACGCTCAACGATCTGCGAA 3888 || || || || || ||||| || || || ||||| || || || |||||||||||| Sbjct 10783 GGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAA 10724 Query 3889 AAGTGCTCAAAGTTCCAGGTATCGGAGAAGATTGCCAGGTGATGACCGCCGTCCTGCAAG 3948 ||| || |||||||| ||||| || | ||||| || || |||||||| |||||| Sbjct 10723 TAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAG 10664 Query 3949 TTAAGGCCGTGGCCTGCCGATGCCGGGTGTGCAAACATGATGGGGATCTCACCCCTGTTC 4008 ||||||||||| || || |||||||| || || | || ||||||| || |||| Sbjct 10663 TTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTC 10604 Query 4009 CACGCTTCCATA-TCCTTATTGCCCTGCTTACCTTTACCCAACGCAACGCCGTGCGGAAA 4067 ||| || ||| | | |||| | |||||||| |||| || ||| | | || || Sbjct 10603 CACAGCTCGATATTGCGGGTTGCGGT-TTTACCTTTGCCCAGTGCCACGGCCTCGGGGAA 10545 Query 4068 TTTCTTCTTAAGTCGTGCCAGGTCATGCTTATACTGATACGCAACGAGCAACGGCGCGCC 4127 ||||||| | ||| || ||||||| ||| | ||| || || | || ||||| || Sbjct 10544 TTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACC 10485 Query 4128 GTTCAACTCCTCTACGATACTCTCCAGCGCGTCCAGCTTCGCGTCGTGAATCTTCACCCA 4187 ||| | ||| || ||| ||| ||||||||||||||| ||| ||||| | |||| Sbjct 10484 GTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCA 10425 Query 4188 CTCGTCGGTCCGTTCGCCGTCTTCGTCCACCTTATACACGGCCCCGGATGCAAGCTGAAG 4247 || | ||| | || ||||| |||| | ||| ||||| ||||| || | ||| | Sbjct 10424 GTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAA 10365 Query 4248 GCACTTAATTGTCTTCGACGCCGCGTTCGCCGCTTCCACTGTTCCGCT-TTCCAGTTCTG 4306 ||| ||| ||||| | |||||| || | || || ||| |||| || || || || | Sbjct 10364 GCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACT-TTCCCCTCATCGAGATCGG 10306 Query 4307 CAAATAGCTCGCTT-TCAAACTGGTCATAAATCTTACGCGCTTTCTTCGGCAGGTCCACA 4365 | ||| |||| | | | |||||| | || ||||||| ||||||| || Sbjct 10305 CCTTCAGC-AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACC 10247 Query 4366 ACAACCGG-CGTATAGATTGGCTTGTCGCACCCGAAGTATTCCGCCGCGTCAACGGTGAG 4424 | ||| || | || | || || || |||||||||| | |||||| || || || Sbjct 10246 GGACGCGGAACTACA-ATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAG 10188 Query 4425 GGATACATCTGACA---GACGTTGTTGTATCTCTT----TCTCGGAGTTCTTTAGCGGAG 4477 || | || | || ||| ||| || || |||||| | | | | | Sbjct 10187 CGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATGAG--G 10130 Query 4478 CGTGCTGCATAGTGAAGCTGCTAGGCTTAACAGGCTTGCTAATGAACCAGCGGTCGGTAA 4537 | | || || | |||| | ||||| |||| |||| | ||||| | | Sbjct 10129 TCTACGGCGTATT--TGCTG-TCGGCTT--TTTGCTTCGAGGTGAAATACCGGTCTTTGA 10075 Query 4538 ATGC-CTTATAGCTACTGCCGAGGCGTTCGCCACCGTCGACAAACCACGTCTGACCCCAT 4596 | || | | || | |||| || || ||||| | || | |||||| |||||||||| Sbjct 10074 ACGCGGTGAAAGAT-GTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAA 10016 Query 4597 AAGTCTTTTAGCCCGTTTGGCGCTGGTGTGCCGGTAAGGTT-----AAT-CCAGCGCTTG 4650 | || || |||||||||| || || || || || | ||| ||| || | ||| Sbjct 10015 AGATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTG 9956 Query 4651 ACG------TGTTTATGTGCAATCGCTGCC-AGTGCGCGGGCGCGCTT-GCTCCCCTGCT 4702 ||| | ||||| || || |||| || || |||||||| || | || | | Sbjct 9955 ACGCCTTTTTTCTTATGGGCGAT-TTTGCCAAGAGCACGGGCGCGTTTAGACCCGCCACG 9897 Query 4703 TGCTACGATAGCCTTTCAGCTTAGTCGATTCATCGGCAACAACGACCGTAAAGGGCCACG 4762 | | || | | || ||||| |||||||| |||||||| || || ||||||||||| Sbjct 9896 CGTTCGGAACGAC-TTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAAT 9838 Query 4763 CATCGCCGTAATAGTCGACCAGCCACTCAACCACATCATAGTTAACACAAACCACGTTAG 4822 | || || || | |||| ||| || | | ||| |||||| ||| ||||||||| Sbjct 9837 CGTCACCAAGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTAT 9778 Query 4823 CGTCGCTCTCCAGCGCTGCAATGCGGTCCTTCT-CTGGACCAGTGCCGTCTACTACCAGC 4881 | | | | || || ||| | || |||| || |||||||| || || || Sbjct 9777 CCTTACCGGCGAGTACT-TGTTGCCGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGC 9719 Query 4882 AGGGCTGGGAAGCGCCATTTCTCCTGCTCCGGGGGCCAGGTGCCGGACGCAACGCGCAGC 4941 || || || || | |||||| || ||||| |||||| || ||||||||||||||||| Sbjct 9718 AGTGCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGC 9659 Query 4942 GGGGCCAGCACCAGTACGCGGTCCTCCTGGTTGGACAGGATACCCG-TCTGGAACATTTT 5000 || || ||||| || ||||| || | ||| | | | | ||| ||| |||||| | Sbjct 9658 GGCGCGAGCACAAGGACGCGATCTT--TGG--GCCCGAGTTCGCCGCTCTTGAACATCTG 9603 Query 5001 ATTCAGCGCCCACATTGTCGCGCCGGTTTTACCCGATCCCATTGTCGCCCATATATTACA 5060 || |||||||||| ||| ||||||||||| || ||||| || || ||| ||| || Sbjct 9602 GTTTAGCGCCCACAGTGTGGCGCCGGTTTTGCCACTACCCATCGTGGCGTATAGATTGCA 9543 Query 5061 TCG 5063 || Sbjct 9542 GCG 9540 Score = 230 bits (254), Expect = 7e-56 Identities = 483/710 (68%), Gaps = 14/710 (2%) Strand=Plus/Minus Query 14385 TGTTCAGTAAGCACGACCCGATCATCGAAGGCCTGGTCAACTTCAAATCGACCTGGTATC 14444 |||||| |||| ||| |||||||| || || | | |||||| |||||| ||||| Sbjct 1233 TGTTCACTAAGAACGTGCCGATCATTGATGGGTTTTTAAACTTCCGATCGACGTGGTACG 1174 Query 14445 TCGCCGGTGAGTCGAACATTGGCAAGTCGTTCTACGTGCTGGGCCAGATGGCGTCAGTAT 14504 || || || || ||||| ||||| ||||||| ||| || || ||||| | || Sbjct 1173 CGGCGGGCGAATCAAACATAGGCAAATCGTTCTTCGTCCTTGGGGCTATGGCCGCTGTCG 1114 Query 14505 CTGCCGGTATTCCGTTCGGCGGTGC-GAAGGTCGTCCAGTCTCATTGCTTCTATTTCGAT 14563 | || || || || || | ||| || |||||| || | ||||||||||||||| ||||| Sbjct 1113 CCGCTGGCATACCTTTTG-CGGGGCAGAAGGTTATCAAATCTCATTGCTTCTATCTCGAT 1055 Query 14564 GCGGAAGGTGGTGAGGCCTCCAACCAGCGTAAAGAAGCACTGCAGATCAAATATGAGCAC 14623 || |||||||| ||| || || | ||| | || || ||||| || ||| | | Sbjct 1054 GCCGAAGGTGGCGAGAGTTCTCACTTAAGGAAACAGGCGCTCCAGATAAAGTATCAAGAT 995 Query 14624 GACCTGGACAAGCTGCACATTATCGATCTGCAATCACGCGGCTGGGATATCACCAGCAAA 14683 ||||| | ||||||||| |||| || | |||||||| ||| | | || Sbjct 994 GACCTCAATTGGCTGCACATAGTCGACCTCTCGGTATTGGGCTGGGACATCTCAACAAAG 935 Query 14684 TCCGGCTTGCGTGAAGTTATCAGCTTCATCAACCGCACCGCTAAC----GGCGAGCCGGT 14739 ||||| ||| || | | || |||| ||||| | || | | || || || Sbjct 934 ACCGGCAAGCGCCGGGTGACCGACTACATC---CGCAC-GATAGCCCGTGAAGATCCTGT 879 Query 14740 TGGCCTGGTGGCGTTCGACTCACTCAACCAGACTGTTGCGCTGCGGTCCGCCGATGCAAA 14799 |||| || | || |||||||| || ||||||||| | || | || || |||| Sbjct 878 TGGCATGATAGCCTTCGACTCTCTAAACCAGACTATGGCTTTACGCTCTTCCGACCTTCG 819 Query 14800 ACCGTTCGACGAGAATAACGCCAGCGATATGGGTGAAGTGGTCAAAGCGCTGAAGGCCAT 14859 |||||||| ||||||| ||| |||||||| |||||||| || ||||| | || Sbjct 818 GCCGTTCGATGAGAATAGCGCGGCAGATATGGGGGAAGTGGTACGCGCCCTGAAAGAGAT 759 Query 14860 TGCGGAAAATACAGGCGGCAGTGCGGGCGTCATCCACCACCCGGCGAAGGGTGCAAACGG 14919 | || ||||| || |||||| | || |||||||| || || | || Sbjct 758 CTCTATCGCAACCGGCGGATCGGCTGGCGTCGTTCATCACCCGGCAAAAGGGGGTGGCG- 700 Query 14920 CAGCA-GATCTCCCCGTGGGTCCGGCGCGCTGCATGGCGCTGTCGATTCTGCGTTCTTCC 14978 | || | ||| | || || ||||||||||||||||| || || ||||| || || || Sbjct 699 CGTCACGCTCTGCGCGCGGTTCCGGCGCGCTGCATGGTGCAGTGGATTCGGCCTTTTTTA 640 Query 14979 TGGAACAGCCGGA-CGACAACCAGCCAGGTCAACTCAACCTGTATCACGAAAAATCCCGT 15037 | || ||||| || | | || || ||| || |||| || |||||||||||||||||| Sbjct 639 TCGAGCAGCCTGATCCAGAATCAATG-GGTAAAATCAATCTTTATCACGAAAAATCCCGT 581 Query 15038 AACGGCATCAAGCAAGCGCCGCGCGGCTTCGTCCTGCTCAAGTGCAAGGT 15087 |||||| | |||||| |||| | |||||| | |||| || || || || Sbjct 580 AACGGCGTGAAGCAATCGCCAAGGGGCTTCCTGCTGCGAAAATGTAAAGT 531 Score = 176 bits (194), Expect = 1e-39 Identities = 465/707 (66%), Gaps = 10/707 (1%) Strand=Plus/Minus Query 7818 CCGCGTGCCAGGTTTTGAGGCTGGAAGCCTTTACCCGCCCAGCGCAGCGTGCGCTTTGCA 7877 || ||||| || || || || || |||||| || ||||| | || || ||||| || Sbjct 7729 CCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGGGTTCGCTTGGCG 7670 Query 7878 CCACCATACTGAAGACACCCACGGCGGCGACCATCTGCGGATAAGCCGTTAACTAGCGGA 7937 |||||||| |||||||| || ||||| || || || ||||| | || | | || || Sbjct 7669 CCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCCTCGATAAGTGGC 7610 Query 7938 TTGTACTTAGTCGATGCCGTTGATGACGCTCCGAGGCGCATTTCTATAAGCGCTTTGCCT 7997 ||||| || |||||||||||||| | || |||||||||||||| || | | | || Sbjct 7609 TTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATGATAACGCGGGCT 7550 Query 7998 TCGTCGGGGAAGTCCGGGTCTTCAAGCAGGTCGTTAAGTGTGGATTTCTGCGCGTTGTGG 8057 ||||| |||| || || ||||| |||||||| | | ||||| || || | Sbjct 7549 TCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTCTGGGCATTCGGT 7490 Query 8058 ATCGTGAACGCCGGGGCGATATCACGTAGGATTGGCAGGAAGTCATTGCCGGTCAG--CT 8115 | ||| ||||||||| | | | || | |||||||| || ||||| || || Sbjct 7489 ACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCACCGGTAAGACCT 7430 Query 8116 TACCGCCAAATCGCTCCCAGGCTTCCTCTTTCAATTCTTCCTTATGCGCCTGTACCGCTT 8175 | ||| || || || || |||| | ||||| ||||||| |||||| || | Sbjct 7429 GA--GCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGCTCCTGTATGGCCT 7372 Query 8176 TGATCGCAGCGCGCGCCAGGTCAACGTCCACGTAGAAGCCGCGGTCGTTAATCAATTGGT 8235 | ||| || || || || || ||||| || || ||||| ||||| | |||| Sbjct 7371 GTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCATTAATGATCTGGT 7312 Query 8236 CGATAAGCAGGATTTCGTCTTCCTTCGGCGTATTACCCCAGTCCGGTATGCGCCAATAGA 8295 | | | | ||| || ||| || ||| ||| || | || | || Sbjct 7311 CAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCCATGTTGGCAGTCGGTAGAAGG 7252 Query 8296 CTTCCCTCATCGCGATGATATCCAGCGCGGCATAGCGCAGGAA---TTTAGCCCACTCCT 8352 | || | ||| | ||||||| || || ||| | || ||| ||| || | Sbjct 7251 CCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAAGCGTTT---CCATTCTT 7195 Query 8353 CGGGGTGCGTCTTGCGCGTGTAGCGGCGGATTTTGTAGGTCTTAGGGGTAGGCTTACAGA 8412 |||||||||||| |||||||| || || ||||| ||||||| || || ||||||| Sbjct 7194 CGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGGCGTGGGTTTACAGA 7135 Query 8413 ATCGTTTAATCAGCGCCTTGCCTGCCTTATCCTTCGCGTGCTCTGCGTCAACGCCCAGCA 8472 | || | |||| |||||| || |||||||| || ||| |||| || |||| |||| Sbjct 7134 AGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGCTCCACGGGAACGTTTAGCA 7075 Query 8473 CCTGACACTGCATATCGAGGCTACCCGGCAGCGCGTGCCGAAAGGCC 8519 | | || | | ||||| |||||||| ||||| || ||||| Sbjct 7074 CTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGGCC 7028 Score = 104 bits (114), Expect = 7e-18 Identities = 216/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 9330 TCATCGCGGAAGCGCATACCCAGCAGACCACAGCCTAAGCCTTTGCCGTTGGTATTGTTC 9389 || || ||||| || | || || || | ||||| | |||||||||||| || | | Sbjct 5620 TCTTCACGGAAACGGACGCCGAGAAGTTCGCAGCCAAGGCCTTTGCCGTTCTCGTTATCC 5561 Query 9390 CAGGCCCAAATATCTAAGGAAACGTT-GCAATAGCAACCGGAATAGATTTCCTTCCCTTC 9448 || ||||| | || || ||||| || || ||| ||| ||| | ||| | ||||| Sbjct 5560 CATGCCCAGAAGCTTACAGAGACGTTCGCCAT-GCAGCCGCTATAAACTTCGTCACCTTC 5502 Query 9449 GATTTCGTCGCCGTCGATGGTCAGACCCTGCTCCGTCTGCTTCTCGCCTTCGGAAGTCTG 9508 ||| || || |||||| ||||| || || ||||||| ||||| ||||| Sbjct 5501 GATCTCATCATTGTCGATAGTCAGGCCAGATTCGGTCTGCTCTTCGCCCGTTGAAGTTAA 5442 Query 9509 GATGATCGGCTGTTTGAATGATTTGGCATTGATG--TACAGCTTTCCTTCAAACTCTTCC 9566 ||| ||||||| ||||| || ||||||||| | ||| | ||||||| || Sbjct 5441 GATCCTCGGCTGCTTGAAGCGCTTAGCATTGATGATCAAAGCGT--CTTCAAATTCAGGA 5384 Query 9567 GTCACTTCTTCACGCTCGTCACCATCACGAACTGCACATTCTTTCGAATCCTGTGCGTAG 9626 | |||||| |||| |||||| || || || || ||||| || |||||| |||| Sbjct 5383 CTTGGTTCTTCGCGCTGGTCACCGTCGCGCACACAGCACTCTTTAGAGTCCTGTCCGTAA 5324 Query 9627 TGGCGGTCCATCCACTT 9643 |||||||| | ||| || Sbjct 5323 TGGCGGTCAAACCATTT 5307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142085005307700