Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq7931 288 7e-73 seq48654 196 3e-45 seq6040 107 1e-18 >seq7931 Length=164496 Score = 288 bits (318), Expect = 7e-73 Identities = 670/1006 (67%), Gaps = 16/1006 (2%) Strand=Plus/Minus Query 63009 CCCGGCGCCGGTTCATAATAGCGTCCGTTGCTCTCGTTGACGATAACAGAGCCGACGTAG 63068 || || ||||||||| |||| || || || || ||||| |||||||| |||||||| || Sbjct 128842 CCAGGAGCCGGTTCAAAATAACGGCCATTACTTTCGTTCACGATAACCGAGCCGACATAA 128783 Query 63069 CGCTTATCAAACAGGTTATCAACGCGCGTATAGAGGTCGACGGTCCAGTTAT----CTAG 63124 | | | |||||||| || ||||| ||| | | || | | |||||| | || Sbjct 128782 TTCCTGTTGAACAGGTTGTCGACGCGGGTAAATAAATCCAGCGACCAGTTGCTGCGCCAG 128723 Query 63125 CACATATTTATAGCCGGTATTCAGTGCCGTCACCGTATAGGCTGGAGCCTGCTCGCTATT 63184 || | || || | ||||| |||| ||||| || || ||||| || |||| Sbjct 128722 TCCAGACGG-TATCCCGCGTTCAGACTGGTCAGGGTATAAGCCGGTGCCTGAGCGGTATT 128664 Query 63185 GGCATCGTTGACCTGAATATCGCTCATATAGCGGACTTCAGCGCCAGCGTACCATCCCTC 63244 |||||||||| |||||||||||||||| ||||| | ||| ||||| || | | || || Sbjct 128663 GGCATCGTTGGCCTGAATATCGCTCATGTAGCGAATTTCGGCGCCCGCATGGAAACCTTC 128604 Query 63245 TTCCGGCACCCAGCCAAAGGAGGCATAGGCGCTATTACGTGCAATCCCCGGGATCCGATT 63304 |||| |||| || | ||||| || ||| || || ||||| ||||| ||| || Sbjct 128603 CGGCGGCGCCCAACCCAGCGAGGCGTAAGCGGAGTTGCGCGCAATACCCGGCATCTTGTT 128544 Query 63305 GCCGCTCTGAATAG----CATCGCCGG-----CGTTTTCACGGTAGGTCGCATCCAGCAG 63355 ||| |||| || |||| ||| ||||| ||||||||||| ||||| Sbjct 128543 ACCGGCAGGAATGCTGCTCACTGCCGTATTGACGTCATCACGATAGGTCGCATCGAGCAG 128484 Query 63356 CGTCCACGCCAGTTTGGCGCGCCAGGCGGGCGCAAATTGCTGATCCCATCCCAGTTCGAC 63415 |||||| |||| |||||||| | | ||||| |||||||| | |||||| | Sbjct 128483 CGTCCAGGCCATGCGCACGCGCCAGTCTGAGGCAAACTGCTGATCGAACGACAGTTCAAG 128424 Query 63416 CCCGCGGCGGCGCGTCTTGCCCGCGTTCTGATAGGACGTACGGCCATTGTCGCTGGCGGC 63475 |||||| || |||||| |||| |||| ||| || || || || |||||| || Sbjct 128423 CCCGCGACGTCGCGTCGTGCCGACGTTGGTATAACTGGTGCGCCCGCTGCCGCTGGTCGC 128364 Query 63476 AACGACAATTTCATTTTTCGTGTCCGTATTGAAGA-CGCTCAGGCTCGCCATCCCGGTGC 63534 ||| | | || || | ||||| || | ||| | |||| | || || || || Sbjct 128363 GACGGCCAAATCGTTGTCGGTGTCGGTCTGGAACAGCGCTGCCG-TCAACAGGCCATAGC 128305 Query 63535 CCACCTGCCATTTACTGCCTGCTTCAACGGTGGTGTTAGTGGCCGGTTGCAGAGCAAAGT 63594 | | || || ||||| || |||||| || | || | ||||| ||| | | Sbjct 128304 CGATACGCGTCTTGCTGCCAATCTCGACGGTGTTGCTGGTCGACGGTTTCAGGTTGATAT 128245 Query 63595 TAAGCCCGGACTGACCATCGGGACGATAGGACAGCTCGTTAATGGTCGGCGTTTCAAATC 63654 | || || | | ||| || || ||||| ||||||| |||||||| ||||| || |||| Sbjct 128244 TCAGACCCGCCGTACCGTCAGGGCGATAAGACAGCTGATTAATGGTTGGCGTCTCGAATC 128185 Query 63655 CCCTCCCGGCAGAGAGGTAAACGTTCCACTGCGGCGTCATGGCATACTTCAGCGCTGCCG 63714 | | ||| || || | ||| |||||||| ||||| | ||||| |||| | ||| Sbjct 128184 CGCGCCCCGCTGAAACGTATACGTTCCAGGCAGGCGTTAGCGCATAACTCAGAGAAGCCA 128125 Query 63715 CCGGAAGCCACTTGTGATAGCTCGCTTCGCCGCTATCATCACCATTTTTACCTACAACAT 63774 ||| ||| |||||||||| || |||||| ||||| || || || | Sbjct 128124 TCGGCAGCGCTTTGTGATAGCGCGTACTGCCGCTGTCATCGCCGTTGCCGGTGGTAATGT 128065 Query 63775 AACGATCGTTGGAATCAAACCATACCGAGCTATAGCGCGCCCCGGCGTCCAGCCCCAGGG 63834 || ||| || |||| || | || | ||| |||||| |||||||| || | ||| Sbjct 128064 AATAATCTTTCGAATTGAAGCTCACGGTGCTGTAGCGCATCCCGGCGTTCAACGTCAGTC 128005 Query 63835 CTGAGGTGAGCTGCCAGTGCGTTTGAATGTAGGGATCGAGGTTCCACATCAGGTTACGTT 63894 || ||||||||| |||||| | || || || || ||||||||| ||| || Sbjct 128004 GGTCCGTTAGCTGCCAGCTCGTTTGCAGATAAGGGTCCAGATTCCACATCTTGTTCTTTT 127945 Query 63895 CGTTACGTCGCATATCACCTTTGGTGCCGAGATCGTAAACGCCGTTCTGATAAACAAAGT 63954 ||||||| ||| ||||| || |||| ||| || | | |||| || || | Sbjct 127944 CGTTACGGCGCTCGTCACCCTTCACGCCGTACTCGGTAAAGTCATTCTCCACCACGAAAT 127885 Query 63955 TCTCATAGCCTTTGCGCTGTTCGGTCATCGCCTCGTAATCAAGGCC 64000 ||||||| || | || |||||||||| | || ||||| || || Sbjct 127884 TCTCATAACCCTGACGACGTTCGGTCATGGTTTCATAATCCAGCCC 127839 >seq48654 Length=89670 Score = 196 bits (216), Expect = 3e-45 Identities = 432/660 (65%), Gaps = 42/660 (6%) Strand=Plus/Plus Query 97169 TTGTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGC 97228 || || | ||| || ||||| | || |||| |||||||| || || |||| ||| || Sbjct 51823 TTTTCGAGCAGGATCCCCATGGTGCTGGAAATACGCGCCCAGTCTTCATCGTCAAGCTGA 51882 Query 97229 CCTGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGC 97288 || || || ||||| ||||| |||||||| | || || ||||| |||||||||||| Sbjct 51883 CCGGTACGGATACGGGTCTGGTCAACGCGGGACAGCGAGGCCAGCATACGCATCATCAGC 51942 Query 97289 TGGTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCA 97348 || | || |||||||| ||||| || | | || || || || | | ||||| Sbjct 51943 TGATCGCCGGGCATCTCGAGGCTGAAGATAAGCACCGGTTTTTCCTGCATCATCGCGGCG 52002 Query 97349 TTTTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATG 97408 |||||| || ||||| || || ||||| || ||||| || || || || ||||| ||| Sbjct 52003 TTTTCGCACAGGTTCATGGCGAAGGTGGTTTTACCCATCGACGGACGAGCTGCGACGATG 52062 Query 97409 ATGAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCA 97468 || | |||||| ||| | || ||||| ||||| | ||||||| || | ||||| Sbjct 52063 ATTAAGTCGGACTTCTGCAAGCCAGCCGTTTTCTTGTCGAGATCGCTATAGCCGGTCGAC 52122 Query 97469 AGTCCCGTT--------------------------------------ACACCATCATGCG 97490 | || ||| || | Sbjct 52123 ACGCCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTG 52182 Query 97491 GTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAGAATGCTGGCGATATCTT 97550 | || || |||| |||||| || || | || || || ||||||| | ||| || Sbjct 52183 GGCGTTGGAACAGCTCTTCGATACGCGCAACGGTGCTTTCCAGAATGCGGTCGACGCTTT 52242 Query 97551 TTGGACCACTACCGCTCTTTTG--TCGTTTTTCAGCTATTTCAAAAACGCGGCGTTCGGC 97608 | || | || | || | ||| || |||| || || | ||| || ||| ||||| Sbjct 52243 TCGGGC--CTTCATCTTTATTGGCGCGGCTTTCTGCAATCTGAAAGACACGGGACTCGGC 52300 Query 97609 CATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATATCCAGCTTCAGCTATTTC 97668 || |||||||| || | ||||| ||||| | | | | || || || || || ||||| Sbjct 52301 CAGATCCAGCAGGTCTTCGCTGCTGCGGCCCTGCGGATCGTAACCCGCATCGGCAATTTC 52360 Query 97669 ATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGAACGATATCCGCATAAGC 97728 || || || |||||||| || || ||||| || |||||||| ||||| || ||||| || Sbjct 52361 GTTAGCAACAGAAATCATCTCGCGCACAACTGCACGTTCACGCACGATGTCGGCATATGC 52420 Query 97729 ACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCAAGGTACGCAAAACCACC 97788 | || |||||||| || ||||| || ||||||| ||| || || || |||||||| || Sbjct 52421 GCCGATGTTTGCCGCACTTGGCGTATTTTTTGACAGCTCTGCCAGATAGGCAAAACCGCC 52480 Score = 185 bits (204), Expect = 6e-42 Identities = 242/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 44703 CGAGCGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGT 44762 ||| | || | ||| ||||||||||| || | | || | ||||| || ||||| | Sbjct 37288 CGACCACCCAGCATCTGCATGGTGCCACCAACGTTTACCACGATTTCGGTGGTGTATTTT 37347 Query 44763 TCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGA 44822 || |||||||| | ||| |||||||||||||||| ||| ||||| || || |||||| Sbjct 37348 TCAACACCGGCCTGATCGGTCCACTTACGGGTTTGCAGTGCGCCTTCAATATAAACCTGA 37407 Query 44823 GAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTA 44882 || ||||| || | || || | ||| | ||| || ||||| |||||||| || || Sbjct 37408 GAGCCTTTACGCAGGTATTCGCCCGCGACTTCTGCGAGTTTGCCGAACAACACAACGCGG 37467 Query 44883 TGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTT 44942 |||||||| |||| ||||||||| | ||| || |||||||||||| |||| ||| Sbjct 37468 TGCCATTCAGTTTTCTCTTTCTGCTCGCCGGTCGCCTTGTCGCGCCAGCTTTCAGAAGTT 37527 Query 44943 GCGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGC 45002 || | | ||| | | || || ||||| || || ||||| | || || || || || Sbjct 37528 GCCAGGGTGATATTGGCAACAGCACCGCCGTTAGGCATATAGCGGACTTCGGGATCCTGA 37587 Query 45003 CCCAGGGTACCAATCAGGATGACTTTGTTTACACC 45037 ||||| | |||| ||| || ||||||||||| || Sbjct 37588 CCCAGATTCCCAACCAGAATCACTTTGTTTACGCC 37622 Score = 181 bits (200), Expect = 7e-41 Identities = 223/305 (73%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 96701 TAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCA 96760 |||||||| || || || | || |||||||| | | | |||||||| || || || Sbjct 51318 TAGTTATCGAATCGCGACCACTGACCGTTAAATGTGAGGCGAACCGTGCCTATCGGACCG 51377 Query 96761 TTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAA 96820 || || || || |||| ||| | | || || ||||| |||||| | |||||| Sbjct 51378 TTACGCTGTTTGCCGAGAATGATTTGCGCGATCCCCTTTTCTTCGCTGTTGTCGTGATAG 51437 Query 96821 ACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCA 96880 || ||||||||||| | ||||||||||| ||| ||||||||||| || | || |||||| Sbjct 51438 ACCTCGTCGCGATAGATAAACATGATCAAGTCGGCGTCCTGCTCGATGGAACCAGATTCA 51497 Query 96881 CGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGT 96940 || | || || || ||||| || || || |||||||| || || ||| || || || Sbjct 51498 CGGAGGTCGGAGTTGACCGGGCGCTTATCGGCACGCTGCTCCAGGCTTCGGTTCAGCTGA 51557 Query 96941 GACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATC 97000 || | ||||||||||| || || | || ||||| |||||| | || ||||| |||||| Sbjct 51558 GAAAGCGCCACCACCGGCACCTGCAGCTCTTTCGCTAACGCCCTGAGCGAGCGTGAAATC 51617 Query 97001 TCGGC 97005 ||||| Sbjct 51618 TCGGC 51622 >seq6040 Length=129903 Score = 107 bits (118), Expect = 1e-18 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 98305 ACAACCAAATATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGC 98364 ||| | |||| ||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 118363 ACAGCTAAATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGC 118304 Query 98365 CAGCTCTAACC-ACTGAGCTAAAGGGCCG 98392 ||||||||| |||||||||| |||||| Sbjct 118303 GTGCTCTAACCAACTGAGCTAAGGGGCCG 118275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330338450563636