Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031925.1 Length=43788 Score E Sequences producing significant alignments: (Bits) Value seq139038 145 2e-30 >seq139038 Length=11747 Score = 145 bits (160), Expect = 2e-30 Identities = 315/462 (68%), Gaps = 7/462 (2%) Strand=Plus/Plus Query 26636 GAGCGGAGAAGTTGAAGCGGCTAACGCCGCCGCTAAAACGGCTAAGTGCTTGCAGATTGC 26695 ||| ||| |||| || || | ||| || || || || |||||||| ||||||||||| || Sbjct 10317 GAGGGGA-AAGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATGCTTGCAGATAGC 10375 Query 26696 TTCCGGTGCCGTGTATGTGTCGGGGCCGGATGGTGAAGCAACGAAAGACTGGGAGAAAGT 26755 |||||||||||| |||||| | | | || ||||| | || ||||||||| | Sbjct 10376 TTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGTGACTGGGAGCTTAT 10435 Query 26756 GCACGACGCGAAACTCGATGCGTTAGAGTCCATTGTCGAGGAGTTGCAGGGTGCGCCGCT 26815 || ||| ||| || || ||| | ||||| ||| || ||| | | |||||||| || Sbjct 10436 TCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAACGGTGCGCCACT 10495 Query 26816 GCTGGTGGCCTATCAGTTCAAGCACGAACTTGAGCGCATTCTTAGGCGATTCCCCCAGGC 26875 | | ||||||||| | | || || | || ||||| || | | ||||||| |||| Sbjct 10496 GTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAAATTCCCCGAGGC 10555 Query 26876 GCAGGCGTTTGCGAAAGGTGCTAAGGGTAATAAGC-AGATGGAATCTTGGAACCGCGGGG 26934 ||| | | |||||| || | || || | || || ||||||| ||| Sbjct 10556 CGTGGCACTGGGCAAAGGT-AAAACCGCAACCCGCAATATCGAGCTGTGGAACCAAGGGA 10614 Query 26935 AAATCGAGATTTTGTGCGTGCACCCTG-CATCGGCGGGCCATGGTTTGAATTTACAGGAC 26993 | ||| || | | | ||||| | || || |||| || || | || || || ||| Sbjct 10615 AGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGG-CACGGCCTTAACTTGCAAGAC 10673 Query 26994 GGCGGGCATCATCTGG-CGTTTATTTCGCAAGGCTGGAACCTGGAGCACTATTTGCAGGT 27052 ||||| || ||||||| ||||| | | | | |||||| |||| |||||| |||| | Sbjct 10674 GGCGGACACCATCTGGCCGTTTTTAGTGATACG-TGGAACTTGGAATACTATTCGCAGAT 10732 Query 27053 TGTCGAGCGTATAGGTCCTGTACGCCAGAAACAGGCGGGCCA 27094 ||||| || ||||| || || || || | ||||||||||| Sbjct 10733 CGTCGAACGAATAGGGCCAGTGCGACAACATCAGGCGGGCCA 10774 Score = 140 bits (154), Expect = 9e-29 Identities = 673/1061 (63%), Gaps = 53/1061 (5%) Strand=Plus/Plus Query 21730 TGGTAGGCCAAAACTTCCTTATGTTCGACCGACCAGTTATTAAGCATTGCTGGGGGTTCG 21789 |||| |||||||||||| | ||||||||| |||| || | | | || ||||| ||| Sbjct 6931 TGGTGGGCCAAAACTTCTTAATGTTCGACAGACCTGTGCTGTCGAACTGTTGGGGTATCG 6990 Query 21790 AACTCCTGATAGAAAACATCATCGACACTATGATAGTTGCATTCCGCCATGCCCTTCCTG 21849 ||| || ||||||||||||| ||| | | || | ||| | || | || | Sbjct 6991 CGATCCCACCCGAGCACATCATCGACACAATGGTCGAGGCCTACCGATACGCGTTGCCGG 7050 Query 21850 GGTCACTAGCCGCGTTGTGCGAGGTTTTAAACATTGACGCC-AGCATGGCTAAGGATAAA 21908 | || || | | ||||| || ||||| || || ||| | || || ||||| Sbjct 7051 GTTCGCTCGAGAAACTCTGCGAAGTGCTAAACGTTCCCGTGGAGC-TCGCCAAAGATAAG 7109 Query 21909 CGTGGTAAGGCGCTTATACAGCGATTTAGTAAGCCTACGCCTAAGAACTATAAGATTCGA 21968 ||||||||| | || ||||| || |||| || ||||||||||| || ||||| || Sbjct 7110 GCGGGTAAGGCGTTGATCCAGCGCTTCTGTAAACCCACGCCTAAGAATTACAAGATACGG 7169 Query 21969 CGCTACAC--TGCCGCTACCCACCCAAAAGAGTGGGCGGAATTTATTGCATACGCAAAAA 22026 |||||||| || | || ||||| |||| ||| ||| | | |||||| Sbjct 7170 CGCTACACAAAGCAG--ACGCACCCCGAAGAATGGAAACGCTTTGTAGACTACGCACGGC 7227 Query 22027 GCGACATTACATCCATGCGTGAAGTGTATAAGAAAATGCCTAAGTGGGGGAATT---CTG 22083 |||| || || || |||||||| | | | | |||| | | |||| | | | Sbjct 7228 GCGATATCACTTCTATGCGTGAGGCCTTCTACCGACTGCCAACAT---GGAACTCCACGG 7284 Query 22084 AGTTCGAAGACCGCGTGCT-GTGGTTAGACCAAGTAATTAACGACCGCGGATTTAAGGTT 22142 || | ||| |||| | | ||| || ||||| | ||||| ||||| || ||| | || Sbjct 7285 AGATTGAAAACCGGATCTTAGTGCTT-GACCAGATCATTAATGACCGAGGGTTTTACGTC 7343 Query 22143 GACGTTGCCCTCGCTGAGGCCGCGATTGAAGCAGTGACGCGCCACAAGGAAGAGCTACAG 22202 || | || ||| |||| | | || | | || ||| |||| || | Sbjct 7344 GATACCGAGCTTGCTCGTTGCGCGGTACAGGCCATACAGGAGCATAAGAAAGAACTTAAA 7403 Query 22203 GAAGAAGCCCAACGCAAATACGGC---GGTTCACTAACCGGCAAAGACTTCTTGCCTATT 22259 | || || |||||||||| ||| || ||||| || ||| |||| Sbjct 7404 GCCGAGGCTATGGCCAAATACGGCTCAGGT---CTTACCGGTGCGGATTTCCTGCCGGCA 7460 Query 22260 TTACAGGAACTGGCGCCGGCGCACCGCATTCACAACGCACAGAAGTCAACACTAAACGAT 22319 || | | || || ||||||||| | | | || || |||||| | | || Sbjct 7461 TTGCGCGGTCTAGCCCCGGCGCACACCGTACCGAATGCCCAGAAGGCGGTCTTGCTGGAC 7520 Query 22320 TTGCTGGCGGATGAGGATTTACCGGACGACGCCCGCACTATTATCGAGATGCGTCTCGGG 22379 |||| | ||| ||| | || ||||| |||||| ||| || || ||||| ||||| Sbjct 7521 CTGCTAGAAGATCCAGATCTCCCAGACGAAGCCCGCGTTATCATTGAAATGCGCCTCGGC 7580 Query 22380 GCTGCTTCTACCGCATCGACGAAATACGCGCCGTTGCTGTTAGGCCGTTCTTCAGATGAC 22439 || || || || |||||||| |||||| ||| | | || | || | || | | Sbjct 7581 GCAGCGTCAACGGCATCGACAAAATACAAGCCACTTATCGAGGGTCTGTCCGCCGACGGC 7640 Query 22440 CGCCGCCGTGGTTGCCTGCAATACGGAGGAGCGAAGCGAACATTGCGGTGGGCGGGGAAA 22499 || ||||| ||||| || ||||| || || || |||||||| | | ||||| ||| | Sbjct 7641 CGGCGCCGGGGTTGTCTTCAATATGGTGGCGCCAAGCGAACCCTAAGATGGGCTGGGCGA 7700 Query 22500 GGTTTTCAGCCGCAAAACCTGGCGCGCGGGTATTATCACGACGA-------------TG- 22545 || ||||| ||||| || || || || |||||||| |||||||| || Sbjct 7701 GGCTTTCAACCGCAGAATCTTGCACGTGGGTATTACCACGACGACCCAGAAAAGCCTTGG 7760 Query 22546 ---AACTGGATAG----------GGGTATTGCCGCGTTACTTAAAGGCCGTGCACACCGC 22592 || | | || | |||| | ||||| ||| || | | Sbjct 7761 CCCAAGTCAAAAGACTTGTCACTCGCGATTGAGTCACTACTTCGAGGTAAAGCGGAGAAC 7820 Query 22593 CGCTTCGATGTAGCTAAACTAACGGCATCGACGGTGCGTAGCTGCATCAT---CCCGGAA 22649 ||| |||| | || || ||||||||||||||||| || || || || ||||| Sbjct 7821 TGCTACGATATCGCCAAGCTAACGGCATCGACGGTCCGATCTTGTATTATTGCAGCGGAA 7880 Query 22650 GCAGGACATAAGTTTGTAGTTGCCGATTACTCTAACGTAGAAGGCCGTGGTTTAGCGTGG 22709 || || ||| | || |||||||| ||| ||||||| || || ||||| || || ||| Sbjct 7881 GC--GA-TGAAGCTGGTTGTTGCCGACTACGCTAACGTTGAGGGGCGTGGGTTGGCATGG 7937 Query 22710 CTGGCGGGCGAAGAAACCGCGCTTGATACGTTCCGCGCCGG 22750 || || || ||||| | | ||| || || ||||| ||||| Sbjct 7938 CTTGCAGGTGAAGAGTCTGTGCTCGAGACATTCCGTGCCGG 7978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139768836025000