Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq48654 127 5e-25 >seq48654 Length=89670 Score = 127 bits (140), Expect = 5e-25 Identities = 236/345 (68%), Gaps = 1/345 (0%) Strand=Plus/Plus Query 26638 CCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCC 26697 ||||| ||||| |||||||| ||||||||| || | || |||||| ||| | || Sbjct 37291 CCACCCAGCATCTGCATGGTGCCACCAACGTTTACCACGATTTCGGTGGTGTATTTTTCA 37350 Query 26698 TGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAA 26757 | | ||||| ||| || | || ||| | |||||||| |||||||| ||| Sbjct 37351 ACACCGGCCTGATCGGTCCACTTACGGGTTTGCAGTGCGCCTTCAATATAAACCTGAGAG 37410 Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 ||||| ||||| || |||| || | |||||| ||||| ||| || || || |||||| Sbjct 37411 CCTTTACGCAGGTATTCGCCCGCGACTTCTGCGAGTTTGCCGAACAACACAACGCGGTGC 37470 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || || || | ||| || ||||| || || ||| || ||||| ||| || || || Sbjct 37471 CATTCAGTTTTCTCTTTCTGCTCGCCGGTCGCCTTGTCGCGCCAGCTTTCAGAAGTTGCC 37530 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 | || | || |||| || || | | || ||| | || ||| ||||| || || Sbjct 37531 AGGGTGATATTGGCAACAGCACCGCC-GTTAGGCATATAGCGGACTTCGGGATCCTGACC 37589 Query 26938 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 || |||| | ||||| || |||||||||||||| ||||| Sbjct 37590 CAGATTCCCAACCAGAATCACTTTGTTTACGCCTCTGCTGGCCAT 37634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129082510162060