Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq123102 163 6e-35 seq21876 163 6e-35 seq33954 138 2e-27 seq88566 136 8e-27 seq139022 100 6e-16 seq78961 95.1 3e-14 seq54767 95.1 3e-14 seq45723 95.1 3e-14 seq32335 95.1 3e-14 >seq123102 Length=1410 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| || | || ||| ||||| |||||||| || | Sbjct 589 ACCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGA 648 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || ||||| || || |||||||||||||| || Sbjct 649 TAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGG 708 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| || |||||||| ||| | ||||| || ||||||| ||| || Sbjct 709 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAAC 768 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 769 TTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 107 bits (118), Expect = 4e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| | ||| | ||| || || ||| || || || || || || | Sbjct 817 ACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGA 876 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||||| ||||| || || || |||||||||||||| || || Sbjct 877 CAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 936 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||| || || ||||| || | || || || || |||| || || Sbjct 937 GATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAAC 996 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||| || || |||||||| Sbjct 997 CTCCAAAGTGATGGTTTTTCCCGTCAA 1023 >seq21876 Length=2391 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || || |||| ||| | ||| ||| || || |||||||| || | Sbjct 739 ACCACCACGTAGACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGA 680 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || |||||||| || | ||| || ||||| ||||| ||||| || || || | Sbjct 679 CAAG-GTACGGCCATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGG 621 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| |||||||| || || ||| | ||||| ||||| || | || | Sbjct 620 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAA 561 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 560 CTTCCAGGGTGATAGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 Score = 134 bits (148), Expect = 3e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 || || || ||||| ||||| || || || ||||| ||||||||||| || |||||| Sbjct 903 GTCCGTCCGTCCTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATA 844 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || |||||||| || ||||| ||||| ||| | || |||||||| || | |||||||| Sbjct 843 CCTTCCTTGTCCTGAATCTTAGCTTTGACGTTCTCAATAGTGTCGGATGGCTCGACTTCT 784 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||| || || || |||||||| || ||||| || ||||| Sbjct 783 AAAGTGATAGTTTTCCCTGTCAAAGTTTTTACGAAGATTTGCAT 740 Score = 100 bits (110), Expect = 6e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| ||||||||||| |||||||| || || ||| | |||||||| || || | || Sbjct 127 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTCTCGATAGTATCGGATGGCTCA 68 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 67 ACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACGAAGATCTGCAT 18 >seq33954 Length=41731 Score = 138 bits (152), Expect = 2e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | || || || ||||||||||||||||| || |||||||| || || ||||| ||| Sbjct 1267 AAACTCGATCCGTACATCAACGTCGATCCGGGTACCATGAGCCCAACCCAGCATGGTGAA 1208 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 || |||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||| Sbjct 1207 GTCTTCGTGACCGAAGATGGGGCTGAAACAGATCTCGATCTGGGTCACTACGAACGTTTC 1148 Query 301546 A 301546 | Sbjct 1147 A 1147 >seq88566 Length=1870 Score = 136 bits (150), Expect = 8e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || | ||| | ||| ||||| ||| ||||| ||||| || ||| | | || || Sbjct 239 AGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCCAAAGTTCGT 298 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || || ||||| || ||||| || |||||||| || || ||||| || ||| Sbjct 299 CCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCTTCC 358 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| ||||| ||||| || || ||||| || |||| ||| || || || ||| Sbjct 359 TTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACCTCAAGTGTG 418 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || |||||||| | || ||||||||||| ||||||| Sbjct 419 ATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq139022 Length=5820 Score = 100 bits (110), Expect = 6e-16 Identities = 240/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| ||| ||||| | ||||| || || |||||||| |||| || || ||||| || Sbjct 411 GACCCATATCTCAACATTGATCCTGGAACAATGAGCCCAGCTCAGCACGGGGAAGTATTT 352 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACT-TC 301550 || || || |||||||||||||| ||| | || || || || ||||| ||||| ||| Sbjct 351 GTTACTGAGGATGGTGCTGAAACTGATTTAGACCTTGGACATTACGAGCGTTTTACTAAA 292 Query 301551 ATTAACCCTTAAGCGTGAAAG-TAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCG 301609 ||||| | || | | | | ||| | || ||||| |||| || | | || |||| Sbjct 291 ATTAAAGC--AACCAAGGACGACAATATAACAACTGGTAAAGTATA-TAATAAATTATTA 235 Query 301610 AA-AATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACC 301668 || || ||| | ||| ||||| || || || |||||| | |||| || | || Sbjct 234 AAGAAGGAAAGGTGTGGTGATTATCTAGGCAAAACTGTGCAAATCATTCCTCATGTGACA 175 Query 301669 GATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGGAGAA 301728 ||| ||||||| ||| | || | ||| | | |||| | | || | ||| Sbjct 174 GATTTAATCAAATCTTTCATTTTTAATGGTACAGAAGATTTAGATTTTGTAATATGCGAA 115 Query 301729 ATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAA 301785 || || ||||| || || ||||| ||| | || ||| | ||||| || || ||| Sbjct 114 ATAGGCGGAACCGTAGGTGATATTGAAAGCCAACCGTTTTTGGAAGCTATACGCCAA 58 >seq78961 Length=1067 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 435 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 379 >seq54767 Length=1803 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1517 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1461 >seq45723 Length=2157 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1048 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 992 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1538 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1482 >seq32335 Length=1939 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 698 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044874405984084