Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq119770 178 3e-39 seq123102 138 3e-27 seq21876 132 1e-25 >seq119770 Length=1537 Score = 178 bits (196), Expect = 3e-39 Identities = 171/219 (78%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| ||||| || || || || || |||||| | |||||||| Sbjct 1095 AAAATGC---AAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAG 1039 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| || || |||||| ||||||||||| |||||||| || || || Sbjct 1038 CCATCTGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCA 979 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| ||||| |||||||||||||| | ||||||||| | ||||| |||| Sbjct 978 GATCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGAC 919 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | ||||||||||||||||| || || || ||| Sbjct 918 TACAATATTCAAAAAGAATCAACACTTCACCTGGTATTG 880 >seq123102 Length=1410 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || ||||| ||||| | || || ||| || || Sbjct 813 CAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCGGAT 754 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||| ||||| || || ||||| || || || ||||| ||| Sbjct 753 ACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAACAA 694 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || |||||| | || | ||||||| ||| | Sbjct 693 CGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAACATT 634 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||||||||| || |||| || Sbjct 633 CAAAAGGAATCAACACTTCA-CTTGGTT 607 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || |||||||| ||||| | ||||| || || || ||||| || || || ||| Sbjct 1020 ACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTAAAGCT 961 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| || |||||||||||||| || || || ||||| | || ||||| || ||| Sbjct 960 AAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTGGCAAA 901 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || |||||| | || | |||||||||| | || || ||||| ||| ||||| Sbjct 900 CAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACATTGCAT 841 Query 178125 CTTGTTTT 178132 | || || Sbjct 840 TTAGTATT 833 >seq21876 Length=2391 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || || || |||||||| || || || || ||| Sbjct 515 CAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCTGAC 574 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || ||||| || || || ||||| Sbjct 575 ACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 634 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || || | |||||||| | || |||| ||||||| ||| | Sbjct 635 CGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTAC-CTTGTCCGATTACAACAT 693 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 || || |||||||| || ||| Sbjct 694 TCAGAAGGAATCAACGCTTCAT 715 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | ||||| ||||| ||||| | || || || || ||| Sbjct 743 CAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGAGCCATCCGAC 802 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| |||||||||||||| ||||| || ||||| || || ||| Sbjct 803 ACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCAACAA 862 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || | |||||||| || || || || || || ||| ||||| Sbjct 863 CGTTTAATCTTCGCTGGCAAGCAACTGGAGGACGGACGGACT 904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201586720516924