Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq31824 114 1e-20 seq2123 100 3e-16 >seq31824 Length=40797 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || | || ||| |||||||| || |||| ||||| |||| || ||| Sbjct 11168 ATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTGA 11227 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 ||||||||||| ||| |||||| | || || ||||| |||| ||||| | ||| Sbjct 11228 AATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAGA 11287 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 |||||||||||||| ||||| || |||||||| ||||| | || |||||| | | Sbjct 11288 TTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTTT 11347 Query 17414 TTTTCGTCCGG 17424 |||| || || Sbjct 11348 CTTTCCTCTGG 11358 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||||||| ||||| |||| ||||||| |||||||||||| || || ||| Sbjct 10873 AAAGTCAACCCAGGCATAAGGCCTCTCTTCTTTAGCCAAAATATCGCTGCAAAACTTCCA 10932 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 |||||||| || || ||||||| |||||| ||||| | || ||| | | || || | | Sbjct 10933 GAAAAGAAAATTCCTTCGACGGCTGCAAATGCGATAATTCTTTCCCCAAATGTAGCAT-T 10991 Query 17135 TTGTTACG-AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 ||| | | ||||||||| | |||| || ||||| ||| | ||| ||| ||||| Sbjct 10992 TTGATCGGCTATCCATTTCAACGCCCAGTCTGCTTTCCTCTTCACACAAGGCATAGTTTC 11051 Query 17194 TATGGCCTTAAATAA 17208 || || || ||||| Sbjct 11052 AATAGCATTGAATAA 11066 >seq2123 Length=17224 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACA 119919 || ||||| ||||||||||| | ||||| | ||| |||||||| |||| ||| ||| | Sbjct 11168 CCAACGTAGCCGTTGGGATCTCTACCATCCATACT-ATATTTATCATTTAGGTAAATAGA 11110 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 || || || ||| ||| | | | ||||||| | |||||| || ||||| ||||| Sbjct 11109 GATTTCCAATGCCTCTTCTGGACTTTTGGTCCATTCTAATATTTTCTTTGCCCAATACAT 11050 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 | ||| |||| |||||||| ||||| |||||||| || || || |||||||| Sbjct 11049 TCTTAAAAATCCGTGCATTTTGCCTTCTATCACCATTTGTTTCTGAGCTGCATTCCATAA 10990 Query 120040 GGGATCGTGTGT 120051 |||| || || Sbjct 10989 AAGATCATGGGT 10978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517333904441640