Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq31824 105 7e-18 seq32043 89.7 5e-13 seq2123 87.8 2e-12 >seq31824 Length=40797 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || |||| ||| || |||||||| || |||| |||||||||| || ||| Sbjct 11168 ATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTGA 11227 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 ||||| || || ||| || || | || || ||||| | || ||||| | || Sbjct 11228 AATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAGA 11287 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || || ||||||||||||||| ||||| ||||| ||||| | ||| |||||| | | Sbjct 11288 TTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTTT 11347 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 |||| || | | || | | ||||||| | ||||| Sbjct 11348 CTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 >seq32043 Length=59240 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 16221 GTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCG 16278 || |||| ||||| ||||| | ||| || |||||||| || |||||| |||| Sbjct 34384 GTACTTCATCTCT--TGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCT 34441 Query 16279 TTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGC 16338 ||| || | ||| ||||||||||| || ||| | ||| || || || || |||| || Sbjct 34442 TTTTTTAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGC 34501 Query 16339 AAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA 16398 ||| ||||| | || ||| | | ||||||| || || | ||||| || |||| Sbjct 34502 AAACGCGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCA 34561 Query 16399 TTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 || |||||| ||| | |||| ||| ||||| || || || || Sbjct 34562 ATCTGCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAA 34606 >seq2123 Length=17224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGATACA 119072 || ||||| |||||||||||| | || || | ||| || ||||| |||| ||| ||| | Sbjct 11168 CCAACGTAGCCGTTGGGATCTCTACCATCCATACTA-TATTTATCATTTAGGTAAATAGA 11110 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 || || || ||| ||| | || ||||||| | |||||| || ||||| ||||| Sbjct 11109 GATTTCCAATGCCTCTTCTGGACTTTTGGTCCATTCTAATATTTTCTTTGCCCAATACAT 11050 Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192 | |||| | ||||||||||| || || | | ||| || || || | ||||||| Sbjct 11049 TCTTAAAAATCCGTGCATTTTGCCTTCTATCACCATTTGTTTCTGAGCTGCATTCCATAA 10990 Query 119193 AGGATCGTGTGT 119204 | |||| || || Sbjct 10989 AAGATCATGGGT 10978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511205212332360