Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq32043 156 5e-33 seq31824 147 3e-30 seq31237 116 4e-21 seq2604 104 3e-17 >seq32043 Length=59240 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || ||||||||||| | ||||||||| || ||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || |||||||||||| |||||||||| | || ||||||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 ||| |||||||||||| || || || ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 ||| | | |||| || ||| | ||||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 118 bits (130), Expect = 1e-21 Identities = 138/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||||| ||| | ||||||||||||||||| | || || |||| ||| ||| Sbjct 34425 CCAGGCATTAAGCCTCTTTTTTTAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAA 34484 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATGT 24311 |||||||| || || ||||| || || | |||||||||| || || | ||| | Sbjct 34485 ATTCCTTCGACAGCAGCAAACGCGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCT 34544 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | ||||||||| || || |||| ||||||||||| || || |||||||| Sbjct 34545 ATCCACCTCAAAGCCCAATCTGCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTG 34604 Query 24372 AAGAGA 24377 || ||| Sbjct 34605 AATAGA 34610 >seq31824 Length=40797 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24386 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 |||| || ||| |||| || || || ||||| | ||||||||||||||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || |||| |||||||||||||| ||| |||| || || | |||||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || ||||| | | |||||| ||||| || |||||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 ||| || || | | |||| ||||| ||||||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||| ||||| ||| || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | ||||| ||||||||||||||||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 24279 ATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 24335 |||| |||||| ||| | || | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | || ||||||||||| || || |||||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 23978 AAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 24037 ||| || ||||| |||||||||||||| | |||||||| || | | ||||| | ||| Sbjct 10596 AAATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGC 10655 Query 24038 CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-TTT 24096 | || | |||||||||||||||| || ||||| | | ||| | || ||| Sbjct 10656 ATCGGTCAAAAATTCTTGTTCAATAATAACAGCGTC----ACGAATGATTTCGGTGATTT 10711 Query 24097 CTT---CACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTA 24153 ||| |||||||| | | |||||||||||||||||||| || ||||| |||| Sbjct 10712 CTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATCCGTATGTA 10771 Query 24154 GACCCT 24159 ||||| Sbjct 10772 AACCCT 10777 >seq31237 Length=28651 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||| | ||| ||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 ||||| || | || |||||| ||||| ||||| ||||| ||||| |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 || | | || ||||||||||| || ||||| | ||| || || || ||| |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 | || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||||||||| |||||||| || || || | ||| ||||||| || || || |||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| | |||| ||||| || || ||||| || || ||||||||||||| || |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 >seq2604 Length=35699 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || ||||| || |||||||||| || |||||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 ||||| | ||| ||||| | || | ||||| ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 53879 GC 53880 || Sbjct 27019 GC 27018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/161 (75%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 || ||| ||||||||||| || || || | || ||||| || ||| ||||||||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | ||| || |||||||| |||||||| || || || || || |||||||||| || || Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAA 27851 Query 53266 TAAACTA-TTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || | | ||||| | ||| ||| ||| |||||| |||| Sbjct 27850 GAAGCGAGTTTCTTAAACC--ATG--CTG-TTTTATTTTTT 27815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| |||||||||||||| | || | |||||| | |||| ||| ||||| |||| Sbjct 28383 TCCAGCCGTAAAAATGCATCGAGGATAAAGTCGAATAATTTGGATTTGCCATATGAATAT 28324 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | | ||| |||||| || || ||||| | || ||||||||||| | || || | Sbjct 28323 TTAAACTTTGCGATTGATCTATAAAAGCTCCTCGATCAGCAGCCATTTTCAGGACAGTTT 28264 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 53027 ||||| |||||||| | |||||| || ||||| Sbjct 28263 TTTGTTTGATTTCCCATACAGTTTTGTACAACTC 28230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 ||||| | ||||| ||||||||||| || || || || ||| || | || ||| || | Sbjct 26269 CCGCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGG 26210 Query 54489 TCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 | || ||||| | || || || || | |||||||| || | || ||||| ||||| Sbjct 26209 TTTCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATA 26151 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | ||| || | ||| ||||||||||||| || || || ||||| || Sbjct 26150 TGTTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593478745601040