Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq20950 100 2e-16 seq19760 84.2 2e-11 seq23131 82.4 7e-11 seq11882 82.4 7e-11 >seq20950 Length=58994 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 37651 ATGCAAATATTCGTTAAAACTCTAACTGGTAAAACTATTACTCTGGAAGTTGAACCGTCC 37710 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || ||||| ||||| ||||||||||| | || ||||| Sbjct 37711 GACACGATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCACCTGATCAG 37770 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || |||||||| |||||||| | ||| || ||||||||| Sbjct 37771 CAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTAGAACATTGAGTGATTACAAT 37830 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| || ||||| ||||| Sbjct 37831 ATTCAGAAAGAGTCTACCCTTCA 37853 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 38107 ATGCAAATTTTCGTAAAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCT 38166 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | || ||||| || ||||| ||| | || |||||| Sbjct 38167 GATACGATTGAAAACGTAAAAGCTAAAATACAAGACAAAGAGGGTATTCCGCCTGATCAA 38226 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | ||||| || || |||||| |||||||| | ||| || ||||| ||| Sbjct 38227 CAACGATTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAAT 38286 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| |||||||| | || ||||||||||| || || Sbjct 38287 ATTCAAAAGGAATCCACTCTTCATTTAGTATTACGATTACGCGGTGG 38333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||| || || || || ||||| ||| ||||| | Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | |||| |||||| || |||||||| | || || || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37542 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | || || || || |||||| ||||||| | |||| | |||||| ||| Sbjct 37543 CAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAAT 37602 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||||||||| ||||| | || |||| || || Sbjct 37603 ATTCAGAAAGAATCTACTCTTCATTTGGTGCTTCGTCTACGTGGTGG 37649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| ||||| || ||||| ||||| ||| ||||| | Sbjct 38334 AATGCAAATTTTCGTGAAAACGTTGACTGGTAAAACAATTACATTAGAAGTCGAACCATC 38393 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| || ||| || ||||||||| | || || || Sbjct 38394 TGATACCATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCCGACCA 38453 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || ||||| || || |||||| |||||||| ||| | ||| ||||| Sbjct 38454 GCAACGTCTAATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACTTTAAGCGACTACAA 38513 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| || ||||||||| |||| | ||||||| || || Sbjct 38514 TATTCAGAAAGAGAGTACTCTTCATTTGGTTCTTAGATTACGCGGTGG 38561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || || | ||||| || || || ||||| || ||| ||| || || Sbjct 36736 AAAATGCAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGAGCCG 36795 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | | |||| |||||| || |||||||| | || ||| Sbjct 36796 TCCGATACGATCGAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGAT 36855 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||| || | ||||| || || ||||| |||||||| | |||| || ||||||| Sbjct 36856 CAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGATTAC 36915 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||| || ||||| || || Sbjct 36916 AATATTCAGAAAGAGTCTACCCTACA 36941 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||| || || || || ||||| ||| ||||| | Sbjct 37195 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37254 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | |||| |||||| || |||||||| | || || || Sbjct 37255 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37314 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | || || || || |||||| | ||||| |||| || |||||| ||| Sbjct 37315 CAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTATAAT 37374 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| |||||||||||||| Sbjct 37375 ATTCAGAAAGAATCTACTCTTCA 37397 >seq19760 Length=34946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 29063 AGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAA 29122 |||| | ||| ||||||||| | || || ||||| || |||||||| |||||| Sbjct 26105 AGGTATTCCCCCTGATCAACAACGTCTGATTTTTGCCGGAAAACAACTAGAAGATGGGCG 26164 Query 29123 AACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACG 29182 |||| | | |||||||||||||| || ||||| ||| | || | || ||||||||| | Sbjct 26165 AACTCTTTCAGATTACAATATTCAAAAAGAATCAACTTTGCATTTAGTATTACGATTAAG 26224 Query 29183 AGGAGG 29188 ||| || Sbjct 26225 AGGTGG 26230 >seq23131 Length=98978 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || ||||| ||| | | || ||||| || ||| Sbjct 82281 AAAATTCAAGATAAAGAAGGTATCCCGCCCGATCAGCAACGTTTAATTTTTGCCGGAAAA 82340 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| |||||| | |||| | | || ||||||||||| || ||||| || || || Sbjct 82341 CAACTTGAAGATGGTAGAACTCTTTCGGACTACAATATTCAAAAAGAATCCACCCTGCAT 82400 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 |||| | || ||| ||||||| Sbjct 82401 TTGGTCCTTCGTTTAAGAGGAGG 82423 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | ||||| ||||| || ||| |||| ||||| || Sbjct 7109 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCA 7168 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || |||||| |||||||||||| | || |||||| Sbjct 7169 GATTCGATTGAAAATGTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 7228 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || ||||| |||||||| | || | | || |||||| Sbjct 7229 CAACGTTTGATCTTCGCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAAT 7288 Query 29142 ATTCAGAA 29149 ||||| || Sbjct 7289 ATTCAAAA 7296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428165174650565