Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq23131 98.7 8e-16 seq20950 95.1 1e-14 >seq23131 Length=98978 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||| ||||| || || ||||||||||||||||| | Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| |||| || || || || || || |||| || | |||||||| || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || ||| || || || | | | |||||| | ||||| | Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| |||||||| || |||||||| || |||||||| Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||||| ||||| || ||||| ||||||||||||| || ||| | |||| Sbjct 82637 GAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTC 82578 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || || ||||| || || | || | | |||||||| || | ||||| || || Sbjct 82577 TTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATC 82518 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || || |||||| | | | || || | ||||| ||| | ||| ||||| Sbjct 82517 TTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGATGGT 82458 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || |||||||| || |||||||| Sbjct 82457 TTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 >seq20950 Length=58994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| || || |||||||||||||| || | ||| || | || Sbjct 38090 AGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCT 38031 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | |||||||| ||| |||| | || |||||||| || | ||||| || || Sbjct 38030 TCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCT 37971 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || |||||| | ||| ||| || ||||| ||||| ||||| || Sbjct 37970 TGGATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTT 37911 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || ||||||||||| ||||| |||||||| Sbjct 37910 TTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || ||||| || || || || ||| || |||| ||||||||||| || Sbjct 36935 GTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGTTTTCCA 36876 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | || ||||| || || | |||||| ||||| || || ||| Sbjct 36875 GCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGGCTTTA 36816 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| ||||| ||||| ||||| ||| || || || || ||||| ||| Sbjct 36815 ACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGTTAAAGTT 36756 Query 21159 TTGACAAATATTTGCATTTTGAA 21181 || ||||| || ||||||||||| Sbjct 36755 TTCACAAAGATCTGCATTTTGAA 36733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422090798148668