Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq20950 107 2e-18 seq23131 95.1 1e-14 seq11882 91.5 1e-13 seq19760 84.2 2e-11 >seq20950 Length=58994 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 38107 ATGCAAATTTTCGTAAAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCT 38166 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || ||||| || ||||| ||| | || |||||| Sbjct 38167 GATACGATTGAAAACGTAAAAGCTAAAATACAAGACAAAGAGGGTATTCCGCCTGATCAA 38226 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | ||||| || || ||||||||||||||| | ||| || ||||| ||| Sbjct 38227 CAACGATTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAAT 38286 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| |||||||| | || ||||||||||| || || Sbjct 38287 ATTCAAAAGGAATCCACTCTTCATTTAGTATTACGATTACGCGGTGG 38333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 37651 ATGCAAATATTCGTTAAAACTCTAACTGGTAAAACTATTACTCTGGAAGTTGAACCGTCC 37710 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| ||||| ||||||||||| | || ||||| Sbjct 37711 GACACGATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCACCTGATCAG 37770 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || |||||||| ||||||||| | ||| || ||||||||| Sbjct 37771 CAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTAGAACATTGAGTGATTACAAT 37830 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| || || ||||| ||||| Sbjct 37831 ATTCAGAAAGAGTCTACCCTTCA 37853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||||| || || || || ||||| ||| ||||| | Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || |||||| || |||||||| | || || || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37542 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | || || || || |||||||||||||| | |||| | |||||| ||| Sbjct 37543 CAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAAT 37602 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||||||||| ||||| | || |||| || || Sbjct 37603 ATTCAGAAAGAATCTACTCTTCATTTGGTGCTTCGTCTACGTGGTGG 37649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || || || ||| || | || ||||| ||||||||||| ||| Sbjct 37972 GATAAAGAAGGTATCCCACCCGACCAGCAACGATTAATTTTTGCCGGCAAACAATTAGAA 38031 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | ||||| || |||||||| |||||||||||||| |||| | Sbjct 38032 GATGGCCGAACTTTAAGTGATTATAACATTCAAAAAGAATCTACTCTTCATCTGGTACTT 38091 Query 25248 CGATTACGAGGAGG 25261 || ||||| || || Sbjct 38092 CGTTTACGTGGTGG 38105 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| ||||| || ||||| ||||| ||| ||||| | Sbjct 38334 AATGCAAATTTTCGTGAAAACGTTGACTGGTAAAACAATTACATTAGAAGTCGAACCATC 38393 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || || ||| || ||||||||| | || || || Sbjct 38394 TGATACCATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCCGACCA 38453 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || ||||| || || ||||||||||||||| ||| | ||| ||||| Sbjct 38454 GCAACGTCTAATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACTTTAAGCGACTACAA 38513 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| || || ||||||||| |||| | ||||||| || || Sbjct 38514 TATTCAGAAAGAGAGTACTCTTCATTTGGTTCTTAGATTACGCGGTGG 38561 >seq23131 Length=98978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| || || ||||||||||| || |||| || || Sbjct 84021 ATGCAAATTTTCGTCAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGT 84080 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| |||||| || || ||||| | || ||||| Sbjct 84081 GACACTATCGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 84140 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || || || || ||||| |||||||||||| |||| | | |||||||| Sbjct 84141 CAACGTCTCATTTTCGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAAC 84200 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||| | ||| |||| |||||| | || || || Sbjct 84201 ATTCAGAAAGAATCTACATTGCACTTGGTTTTACGACTTCGTGGTGG 84247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || ||||| ||| | | || ||||| || ||| Sbjct 82281 AAAATTCAAGATAAAGAAGGTATCCCGCCCGATCAGCAACGTTTAATTTTTGCCGGAAAA 82340 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| | |||| | | || |||||||||||||| ||||| || || || Sbjct 82341 CAACTTGAAGATGGTAGAACTCTTTCGGACTACAATATTCAAAAAGAATCCACCCTGCAT 82400 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| | || ||| ||||||| Sbjct 82401 TTGGTCCTTCGTTTAAGAGGAGG 82423 >seq11882 Length=45137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | ||||| ||||| || ||| |||| ||||| || Sbjct 7109 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCA 7168 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || || |||||| |||||||||||| | || |||||| Sbjct 7169 GATTCGATTGAAAATGTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 7228 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | ||||| || || ||||| ||||||||| | || | | || |||||| Sbjct 7229 CAACGTTTGATCTTCGCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAAT 7288 Query 25215 ATTCAAAA 25222 |||||||| Sbjct 7289 ATTCAAAA 7296 >seq19760 Length=34946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25136 AGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAA 25195 |||| | ||| ||||||||| | || || ||||| || |||||| | |||||| Sbjct 26105 AGGTATTCCCCCTGATCAACAACGTCTGATTTTTGCCGGAAAACAACTAGAAGATGGGCG 26164 Query 25196 AACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACG 25255 |||| | | ||||||||||||||||| ||||| ||| | || | || ||||||||| | Sbjct 26165 AACTCTTTCAGATTACAATATTCAAAAAGAATCAACTTTGCATTTAGTATTACGATTAAG 26224 Query 25256 AGGAGG 25261 ||| || Sbjct 26225 AGGTGG 26230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410632969486322