Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq16112 159 2e-34 >seq16112 Length=40353 Score = 159 bits (176), Expect = 2e-34 Identities = 246/343 (72%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| |||||||||||||| | | | || || ||||| |||||||| || ||| Sbjct 33428 GTAACATGTGCGATCATACAAGTGAGCAAGGCGTAACTGGCAATATTAAAAGGTACACCT 33487 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 | ||||| || ||||| | |||||| | | || || || | |||| |||| | |||| Sbjct 33488 AAACCCATGTCGGCTGAACGTTGATACATTAGGCATGATAGTTCTCCATTCAC-CGCATA 33546 Query 97236 AAACTG-ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGA-CATTC 97293 ||||| ||| | | |||||| || || || ||||| || || | ||| |||| |||| Sbjct 33547 GAACTGCACTAGACA-ATGACAAGGAGGTAATGCCATCTTGGGCAAATC-AAGAGGATTC 33604 Query 97294 CAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGC 97353 || ||||| | | |||||||||||| |||||| | | ||||||| || || | Sbjct 33605 CACGCACATAGGATTATTCTTCTATCGTCTGGGTTATTTTTAATGGTATCTATAATATTT 33664 Query 97354 TTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCA 97413 ||||||||||| ||||||| || | | | | | ||| ||||| |||||| Sbjct 33665 TTTAATTGATCTACGCCTTTATTCGTGTAGTCGGTATGCATATCTTTGTATTCGGCTCCA 33724 Query 97414 AAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||||| |||||||| |||||||||| || || || || |||| Sbjct 33725 AAATGTCTCCATTGAAATCCATAAATCGGACCGAGATCACCTT 33767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346645698531110