Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20287 120 3e-22 seq19088 120 3e-22 seq13996 111 2e-19 seq23131 107 2e-18 seq20950 98.7 1e-15 >seq20287 Length=9799 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 3348 TTTACAAAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 3289 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||||||| Sbjct 3288 GGATACTTACCACTATACTACCGAGGATTGA 3258 Score = 113 bits (124), Expect = 5e-20 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 3610 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3551 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||| ||| Sbjct 3550 TTACCACTATACTACCGAGGACTGA 3526 >seq19088 Length=11881 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 11456 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11397 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | ||||||||||||||||||||| |||||| Sbjct 11396 TTACCACTATACTACCGAGGATTACATATAT 11366 >seq13996 Length=78181 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 62101 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 62042 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 62041 TTACCACTATACTACCGAGGA 62021 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 61934 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 61875 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 61874 TACTACCGAGGA 61863 >seq23131 Length=98978 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||||||| | || |||||||| || || ||||||||||| ||||| | Sbjct 83563 CCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTTTTGAATATTATAATCCGAA 83504 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| ||||| ||||| ||||| || || || || | || Sbjct 83503 AGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 83444 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | ||| |||| | ||| | | | | ||||||||| | ||| || Sbjct 83443 ATGC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83385 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || | || || || ||||||||||| Sbjct 83384 TTCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGATTTGCAT 83337 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||| | |||||||| || || || |||||||| || || || | Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || || |||||||| ||||| ||||| || |||||||||| || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || || |||||| || | | | | || ||||| | || || Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||||||||| || | || || || || |||||||| Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||| | || |||||||| || || ||||| || ||||| || | Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || || || || || ||||| ||||| || ||||| |||| || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || || || ||| | || | ||||| | | | ||||| || | || || Sbjct 81847 ATACCTTCTTTATCT-TGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGAC 81789 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| ||||||||||| || || | ||| || |||||||| ||||||||| Sbjct 81788 TTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTTT 81737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||||||| | |||||||||| ||| || |||||||||||||| || | Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || || || || || || || || || | || ||||| |||| ||| Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | | | | |||||||| | || || Sbjct 82303 ATAC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGAC 82245 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 82244 TTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || ||||| |||||||| || || ||||| |||||||||| ||||| || | Sbjct 84235 CGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCA 84176 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||| || ||||| ||||| || ||||| || | || | | |||||| Sbjct 84175 TCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTG 84116 Query 43089 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| |||| | |||| | | | ||||| || | || || |||| ||||| Sbjct 84115 TCT-TGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGAT 84057 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| |||| || || || || |||||||| Sbjct 84056 GGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||||||| | ||||||||||| ||| || ||||| || || || || | Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || || || || || ||||| || | || |||||||||| || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | | | | |||||||| | || || Sbjct 82531 ATAC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAAC 82473 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || | || || || || |||||||| Sbjct 82472 TTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | || ||||| || || ||| ||||||||||| ||||| | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || || ||||| || || ||||| || | || ||||| |||| || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | ||| | | | | ||||||||| | ||| || Sbjct 83671 ATAC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83613 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| |||||||| || |||| || || ||||| |||||||| Sbjct 83612 TTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||| | || |||||||| ||| || ||||| || || || || | Sbjct 82195 CCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82136 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || || || || || ||||| || | || |||||||| | || Sbjct 82135 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGGA 82076 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || ||| |||| | ||| | | | | || ||||| | || || Sbjct 82075 ATACCTTCCTTATCT-TGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGAC 82017 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || | |||||||| ||||||||||| Sbjct 82016 TTCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 81969 >seq20950 Length=58994 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || |||||||||||||| || ||| || |||| || ||||| || |||||||| Sbjct 36930 CTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAA 36871 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG- 43110 || | ||| ||||| || | || | || || |||||| ||| |||| | || | || Sbjct 36870 GATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCC-TGAATTTTGGCTTTAACGT 36812 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||| ||| || || || || | ||||| ||||| || |||| || || | Sbjct 36811 TTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCA 36752 Query 43171 CAAAGATTTGCATTTT 43186 ||||||| |||||||| Sbjct 36751 CAAAGATCTGCATTTT 36736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571583705158440