Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq32043 91.5 1e-13 seq31824 87.8 2e-12 seq476 86.0 6e-12 >seq32043 Length=59240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || | |||||||||||| |||||||| | |||||| || | ||||| Sbjct 34708 ATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGTGATCTGG 34767 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || || || || ||||||| || | | ||||||||| | || | || ||| Sbjct 34768 AATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTCGACTAGA 34827 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| || || || ||||| |||||||||||| || | | ||| |||||| | | Sbjct 34828 TTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAATAAACTGT 34887 Query 16685 ttttC 16689 |||| Sbjct 34888 CTTTC 34892 >seq31824 Length=40797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| ||||| ||||| | ||| ||||||||||| ||||| | |||||| || | || || Sbjct 11167 AATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTG 11226 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||| || ||||| |||| ||||| | || || ||||| | || | ||| | | Sbjct 11227 AAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAG 11286 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 |||||||| || || || || ||| || ||||| || | | |||| ||| || || Sbjct 11287 ATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTT 11346 Query 16684 tttttC 16689 | |||| Sbjct 11347 TCTTTC 11352 >seq476 Length=4318 Score = 86.0 bits (94), Expect = 6e-12 Identities = 198/289 (69%), Gaps = 12/289 (4%) Strand=Plus/Minus Query 13486 TAGTTTTTCAAAAACGATTTGTGCTATTCTGTCCCCTTTTTTGATATA-ATAAGGAGAGT 13544 || ||||| ||| | |||||||||||||| || || |||| | | | | || || | Sbjct 561 TATTTTTTGAAATATAATTTGTGCTATTCTATCTCCAGTTTTTACAAAGAAAACTTGA-T 503 Query 13545 TTCCATTATTGATAAATATAACACCTATTATACCTCTGTAATCACTATCTATTACCCCAC 13604 || || ||||| || || ||||| || | || ||||||||| ||| || | |||| Sbjct 502 TTGAATGATTGAATAAAATGACACCAATATTCCCCCTGTAATCAGCATCAATAATTCCAC 443 Query 13605 CACCTATATCTATACAACTGTTTAATGATAATCCTGATCTTGGTGCTATCCTACCATAAC 13664 | || || | || || | | || | |||||| |||||||| ||||| ||||| | Sbjct 442 CGCCAATCTGAATGAAATTATGTAGCGCTAATCCGGATCTTGGCGCTATATGCCCATAGC 383 Query 13665 ATC---CATCCGGAATAGATAAACA--AATATCTGTTTTTACTAATAATCTATTTTTTGG 13719 | | || |||| || | || | |||||| ||||| | |||| | || |||| | Sbjct 382 AGCAGTTATTCGGA--AGTTCAAGAGCAATATCAGTTTTAATTAATGCTTTA-TTTTGCG 326 Query 13720 ACAAACTAAGTA-ATCGTAAGCACTATATAAATCGTATCCCGCCGACTT 13767 || || || |||||| ||||| ||||||||| | |||| || ||| Sbjct 325 ACGGTACAACTACATCGTATGCACTGTATAAATCG-AACCCGGCGGCTT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462322815247800