Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq32043 129 6e-25 seq31824 109 5e-19 >seq32043 Length=59240 Score = 129 bits (142), Expect = 6e-25 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||| || | ||| || ||||| ||||| || ||||| || |||| ||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAA--GTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| |||||||| || | ||| || ||||| || || |||||||||| Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | || ||||||||| | || |||| | | |||||| | |||||| || | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||| |||||| | || ||| ||||| |||||||| |||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATA 34608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| |||||||| | ||| |||||||| || || || | || || || | ||||| Sbjct 34708 ATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGTGATCTGG 34767 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || || || ||| ||||||| || | |||||| ||| | || | ||| | | | Sbjct 34768 AATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTCGACTAGA 34827 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 |||||||| || || ||||| ||||||||||||||| || | | | |||||| | | Sbjct 34828 TTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAATAAACTGT 34887 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAA 14698 || ||| | ||||| | ||| || ||||||| |||| Sbjct 34888 CTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGAA 34932 >seq31824 Length=40797 Score = 109 bits (120), Expect = 5e-19 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||| ||| | ||| || ||||| || || || ||||| | |||| || | Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAA--GTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||| || || || ||| |||||||| ||||| || || || ||||| | Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | || ||| ||||| | || |||| | | ||||||||| ||||| || | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||| | || | | || ||| |||||||||||||| ||||| Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAA 11066 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || || || | ||||||||||||||| || |||| || || || | || || Sbjct 11167 AATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTG 11226 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 ||| || |||||| |||| ||||| | || || ||| | || | |||| | | Sbjct 11227 AAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAG 11286 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 |||||| || || ||||| ||| ||| || ||||||||||| | || | ||| || | Sbjct 11287 ATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTT 11346 Query 14653 TTGCTCTTCATTGC-TGAGTTTTTTCCAATCGGCTAAATCCT 14693 | || || | || | ||||||| |||||| ||||||| Sbjct 11347 TCTTTCCTC-TGGCTTTAGTTTTTCCCAATCTCTGAAATCCT 11387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482148302561640