Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq23131 127 2e-24 seq20950 93.3 3e-14 seq11882 86.0 5e-12 >seq23131 Length=98978 Score = 127 bits (140), Expect = 2e-24 Identities = 170/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 || |||| || || || |||| | |||| ||| | ||| |||||||| |||||||||| Sbjct 84254 TTAGTTA-CCACCACGAAGTCGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGT 84196 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 | || | | ||| || |||||||||||| ||||| || | || || | ||| |||| Sbjct 84195 AATCAGAAAGAGTTCGACCATCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGAT 84136 Query 18211 CCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGG 18270 | || | |||||||| || ||||| |||||| | | | | |||||||| | Sbjct 84135 CAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAG 84076 Query 18271 GCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| | |||||| ||||||| || || ||||| || ||||||||||| Sbjct 84075 GCTCGACTTCGAGAGTGATGGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 118 bits (130), Expect = 8e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||| ||||||||||| | | ||| | | ||||| | |||||| || Sbjct 81937 GTTGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 81878 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| || | ||| ||||| || | ||||| ||||| ||| | | || || Sbjct 81877 GCGAAGATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCTTGAATCT-TAGCTTT 81819 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | ||| ||||||| |||||| ||| | ||||||| |||| || ||||| || Sbjct 81818 GACGTTTTCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGGTTTTACCAGTCAACGT 81759 Query 18308 TTTTACAAAAATTTGCATTTTT 18329 ||| ||||| || ||||||||| Sbjct 81758 TTTCACAAAGATCTGCATTTTT 81737 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| || ||||||||||| ||||||||||| | | ||| ||| ||| Sbjct 84005 AAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATC 83946 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | |||||| || || | || | | ||| ||||| || | ||||| || || Sbjct 83945 TTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTC 83886 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| ||| || | | | | ||||| | |||||| ||| | ||||||| | Sbjct 83885 CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACTTCTAAGGTGATGGT 83826 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| || ||||| || ||||| ||||| Sbjct 83825 TTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || | ||| |||| || || || |||||||||||||| |||||||| | Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||| | |||||| || ||| | || | | ||| ||||| || Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | ||| ||||| | |||||| Sbjct 82303 ATACCTTCTTTATCTTGAATTT-TAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGAC 82245 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || ||||| ||||| ||||| || ||||| Sbjct 82244 TTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||| ||||||| | ||| ||| ||||| | ||| || || Sbjct 83305 GTCGATTCTTTTTGAATGTTATAGTCGGAAAGAGTTCTACCGTCTTCGAGTTGCTTACCG 83246 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || || | ||| || || || | |||||| ||||| |||| ||| Sbjct 83245 GCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTTATCTTGGATTTTAGCCTTT 83186 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||| || | ||||| ||| | |||||| ||||||||||||| ||| Sbjct 83185 ACATTTTCAATAGTATCGCTAGGCTCAACTTCGAGAGTGATGGTTTTGCCGGTCAAGGTT 83126 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 83125 TTGACGAAAATTTGCAT 83109 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| ||||| ||||| | | ||| | | ||||| | |||||| || Sbjct 82621 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82562 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| || || || | ||||| ||||| ||||| | |||| Sbjct 82561 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAATTT-TAGCTTT 82503 Query 18249 -ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||||| ||||| ||||||| ||||||||||||| || Sbjct 82502 CACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGATGGTTTTGCCGGTCAAGGT 82443 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| || ||||||||||| Sbjct 82442 TTTGACGAAAATTTGCAT 82425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || ||||||||||| ||||||||||| | | ||| ||| |||| Sbjct 83092 AGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83033 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || | || | | ||| ||||| || | ||||| ||||| Sbjct 83032 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTATCT 82973 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | | | ||||| | |||||| ||| | ||||| | Sbjct 82972 TGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTC 82913 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| ||||| || ||||| ||||| Sbjct 82912 TTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| ||||| ||||| | | ||| | | ||||| | |||||| || Sbjct 82165 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 82106 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | | ||| || || || | ||||||||||| ||||| | || || Sbjct 82105 GCGAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGAATTT-TAGCTTT 82047 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| || || | |||||| ||| | |||||| |||| || ||||| || Sbjct 82046 CACATTTTCAATGGTATCGCTAGGCTCGACTTCTAAGGTGATAGTTTTACCAGTCAAGGT 81987 Query 18308 TTTTACAAAAATTTGCAT 18325 ||||| || |||||||| Sbjct 81986 CTTTACGAAGATTTGCAT 81969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||| ||||||||||| || || || | | ||| ||| |||||| | ||||| || Sbjct 83761 GTTGACTCTTTTTGAATATTATAATCTGATAAGGTTCTACCATCTTCAAGCTGTTTTCCG 83702 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| ||||| || | ||||| ||||| ||||| | |||| Sbjct 83701 GCGAAGATCAAACGTTGCTGATCGGGAGGGATACCTTCTTTATCTTGAATTT-TGGCTTT 83643 Query 18249 -ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | | | ||||| | || || ||||| || ||| |||| ||||| || || Sbjct 83642 CACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGCGTAATGGTTTTTCCGGTTAAAGT 83583 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| |||||||||||||| Sbjct 83582 TTTAACAAAAATTTGCAT 83565 >seq20950 Length=58994 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | |||||||| ||||| || ||||||||||||||||| || || Sbjct 38105 CCACCACGTAAACGAAGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTT 38046 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| ||||||||||| ||| | || | || ||| || || || Sbjct 38045 AAAGTTCGGCCATCTTCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGG 37986 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| |||| | || || || | | | |||||| ||||| Sbjct 37985 ATACCTTCTTTATCTTGGATTT-TAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTAC 37927 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || || || |||||||||||||||||||| Sbjct 37926 TTCCAAAGTAATAGTTTTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| || | ||| | ||||| || ||||| |||||||| || || || Sbjct 38334 TCCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACT 38275 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| | ||||||||||||||| || || |||| | || ||||||||| || Sbjct 38274 CAATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGG 38215 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || |||| | || || || | | ||| || ||| || ||| Sbjct 38214 AATACCCTCTTTGTCTTGTATTT-TAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGA 38156 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||||| | |||||||| ||||||||||| Sbjct 38155 CTTCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | |||||| | ||||| || |||||||| ||||| || || ||| | Sbjct 37193 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37134 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| |||||||| || || | || | || ||| || || || Sbjct 37133 AAAGTTCGGCCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37074 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | |||| || | | | |||||| ||||| Sbjct 37073 ATTCCTTCTTTGTCCTGAATTT-TAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTAC 37015 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || ||||| |||||||||||||||||||| Sbjct 37014 TTCCAAAGTAATAGTTTTACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| |||||| |||| ||||| || ||||| ||||| ||||||||| Sbjct 38561 CCACCGCGTAATCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCTT 38502 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || |||| || | ||| || || || Sbjct 38501 AAAGTACGACCATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGGG 38442 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | || || || | | | | || ||| || ||| Sbjct 38441 ATACCTTCTTTGTCTTGAATCT-TGGCTTTAACATTTTCGATGGTATCAGATGGTTCGAC 38383 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || ||||| ||||| || |||||||||||| Sbjct 38382 TTCTAATGTAATTGTTTTACCAGTCAACGTTTTCACGAAAATTTGCATT 38334 >seq11882 Length=45137 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 |||||||||| |||||||| | | || | | ||||||||| ||||| || || ||| Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | | | |||||||||| || | ||||| ||||| ||||| || || || | | Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 ||| | || || ||| ||| | |||||| |||| || || | |||||||| | Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 18316 AAATTTGCAT 18325 |||||||||| Sbjct 7118 AAATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379192713226635