Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq32043 156 5e-33 seq31824 143 3e-29 seq31237 134 2e-26 seq2604 95.1 2e-14 >seq32043 Length=59240 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | || ||||| ||||| | ||||||||| || ||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 ||||| |||||||||||| |||||||||| | || || |||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||| |||||||||||| || ||||| ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 ||| | | |||| || ||| | ||||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 120 bits (132), Expect = 4e-22 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || ||||| ||| || || | || ||||||| ||| | ||||||||||||||||| Sbjct 34401 ATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTTTAAGCCAAAATATC 34460 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 | |||||| || | ||| || |||||||| || |||||||| || || | ||| ||| Sbjct 34461 GCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACGCGATGATTCTTTCT 34520 Query 33738 CCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 ||| || || | ||| ||||||| | ||||||||| || || |||| ||| Sbjct 34521 CCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTGCTTTTCTTTTAACA 34580 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 |||||||| ||||| || ||||| || ||| Sbjct 34581 CAAGGCATAGTTTCGATAGCATTGAATAGA 34610 Score = 82.4 bits (90), Expect = 1e-10 Identities = 127/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 33416 ATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 33475 ||| || || ||||| ||||| |||||||| | ||| | ||||||||| || | || Sbjct 34130 ATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCATGGATAC 34189 Query 33476 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCT 33535 ||| | ||| |||| | ||||||||||||||| || |||| ||||| | | Sbjct 34190 TGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAATTTCTGT 34249 Query 33536 AACGGTTTCTT---CACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATC 33592 || |||||| |||| ||| || | |||||||||||||| || || || ||||| Sbjct 34250 AA---TTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAAATC 34306 >seq31824 Length=40797 Score = 143 bits (158), Expect = 3e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 |||| || ||| |||| ||||| || ||||| | ||||||||||||||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || |||| || ||||||||||| ||| |||| || || | |||||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || ||||| | | |||||| ||||| || || ||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 ||| || || | | |||| ||||| ||||||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||| ||||| || || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || ||| |||||||| |||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 33726 ATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 33782 |||| ||| || ||| | || | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | || ||||||||||| ||||| || ||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 >seq31237 Length=28651 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| | ||| |||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 ||||| || | || |||||| ||||||||||| ||||| ||||| |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 || | | || ||||||||||| || ||||| | ||| ||||| || ||| |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAA 63850 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||||||||| |||||||| | || || | ||| ||||||| || || || |||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| | |||| ||||| || || ||||| || || ||||||||||||| || |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAA 62262 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 >seq2604 Length=35699 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || ||||| || |||||||||| || || ||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||| | ||| ||||| | || | || || ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 63117 GC 63118 || Sbjct 27019 GC 27018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| |||||||||||||| | || | |||||| | |||| ||| ||||| |||| Sbjct 28383 TCCAGCCGTAAAAATGCATCGAGGATAAAGTCGAATAATTTGGATTTGCCATATGAATAT 28324 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | | ||| |||||| || || ||||| | || ||||||||||| | || || | Sbjct 28323 TTAAACTTTGCGATTGATCTATAAAAGCTCCTCGATCAGCAGCCATTTTCAGGACAGTTT 28264 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTC 62265 ||||| |||||||| | |||||| || ||||| Sbjct 28263 TTTGTTTGATTTCCCATACAGTTTTGTACAACTC 28230 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/161 (74%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || ||| || |||||||| || || || | || ||||| || ||| ||||||||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | || || |||||||| |||||||| || || || || || |||||||||| || || Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAA 27851 Query 62504 TAAACTA-TTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 || | | ||||| | ||| ||| ||| |||||| |||| Sbjct 27850 GAAGCGAGTTTCTTAAACC--ATG--CTG-TTTTATTTTTT 27815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629559980983440