Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq31237 152 5e-32 seq32043 109 5e-19 seq2604 109 5e-19 seq31824 107 2e-18 >seq31237 Length=28651 Score = 152 bits (168), Expect = 5e-32 Identities = 285/419 (68%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 37951 CCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 ||||| ||| |||| ||||| ||||| || ||||||||| ||||| |||||| Sbjct 16114 CCCCAACAATCAAATAAGCCTGGGCATTCATTAGGGCACATTAGACTCCATTTTTCATCA 16173 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 || || || | | |||||| |||||||| ||| || || ||||||||| | | Sbjct 16174 TTCTCAACTCTTCTCATAAACTCATCAGGTATCCACAACGCGTAAAATAAATCCCTAGCG 16233 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGC 38130 | | ||| || || || |||||| || || || ||||| || ||||| | ||| Sbjct 16234 CGAGTTTCCTCTTTACCAGAATTCTTCCTCAATTCTAAGAAATCAAAAATATCCGGATGC 16293 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 || ||||||| ||||| | | || || ||||| || | ||||| |||| || |||| Sbjct 16294 CAAGGTTCTAAATAAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCTTGATCAACATAT 16353 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 || |||| ||||| || | | | ||| ||||| | |||||| ||| ||||| | Sbjct 16354 CTGGCTGTATTATTGTAAACGCGAAGCATTGGTACGAGACCATTTGATACACCGTTAGTT 16413 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCA 38310 || | || || || |||||| || | || || || ||||| || || Sbjct 16414 CCAGCAATGTAGCTATTTGTAGCTCTGATGCAATGAATGTGTAAACCGATTCCTCCGGCT 16473 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 ||| ||||||||||| ||| | | || || | |||||||||||| |||||||| || Sbjct 16474 GATTTGGATATTAAAGCACATCTTGTCAAAGTGTGAAATATACCTTCAATACTGTCTTC 16532 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || |||| || | || || || || ||||||||| | || ||| || ||| Sbjct 15308 CCTTTGCTAACTGGTGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTCG 15367 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||||| ||| | || | ||||| || ||||| |||||||||||||| | | | Sbjct 15368 CAACTAGCTTCCAAAGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTGA 15427 Query 37474 GCTTCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAAC 37532 | || ||| || ||||||| | |||| || ||| ||||||| |||||| | ||||||| Sbjct 15428 GATTTTTCACTTTCGAATGGA-AGCCTCATTAAAATAAACAAATCAGCTAGTCCCTGAAT 15486 Query 37533 ACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 ||| || || |||||||||||| | |||||| Sbjct 15487 ACCAATTCCAATGGGTCTATGTCTGAGATTAGA 15519 >seq32043 Length=59240 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || ||||| || |||||||||||||| |||||||| | ||| || || | Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 || || ||||| |||||| ||| ||||| | | ||||| || | | || | || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 ||| ||| ||||| ||||| ||||| || |||||||||||||| | |||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 12070 AAAGTATTTTTCGTC 12084 ||| | | |||| || Sbjct 34881 AAACTGTCTTTCCTC 34895 >seq2604 Length=35699 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 37935 TTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAG 37994 ||| | ||| |||| ||||| ||| | | || ||||||| |||||||| || Sbjct 26877 TTTTTCAAATTCATCTCCCCAACAATCCGAGAGACCAGGACATTGATTAGGACACATAAG 26818 Query 37995 AGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGT 38054 | ||||| ||| ||||| ||||| || ||| || ||| || ||||||||||| Sbjct 26817 ACTCCATTTTTCTTCTTTCTCTACACGCCGCATGAACTCATCTGGGACCCATAATGCGTA 26758 Query 38055 AAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATC 38114 |||||||||| | ||| |||||| | || ||| |||| ||| || ||| || Sbjct 26757 AAATAAATCTCGAGCTCTGATTTCTTCATGGCCGGTATTTTTTCGTAAATCTAAAAATTC 26698 Query 38115 GAATATATCAGCGTGCCATGGTTCTATATAAAT 38147 ||||||||| |||||||||||||| | |||||| Sbjct 26697 GAATATATCCGCGTGCCATGGTTCAAGATAAAT 26665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || ||||||| | | || || |||||||| || | |||||| |||||| Sbjct 27677 CCTTTGCTAACTGGAGATCCTTCGTACGTATCATAAGGACCATCTTGTTTAGCAAGTTCG 27618 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 || || | ||||| || |||| || ||||||||||| |||||| ||| | || | Sbjct 27617 CAGCTCGCTTCTAAGGCACCATAGTAAATTGTTTCGAATATTTGTTGATTAAGTAACTGA 27558 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 | |||||| ||| | | | | || | || || | ||||||||||| |||| | Sbjct 27557 GACGTTTCGCTCTCGTACGGTAATCGCATCATAATGAAAAGGTCAGCCAAACCTTGAATA 27498 Query 37534 CCGATACCTATGGGTCTATG 37553 ||||||||||| ||||| || Sbjct 27497 CCGATACCTATAGGTCTGTG 27478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 |||| ||| | || || ||||| |||||||| | |||| ||||| ||||| ||| Sbjct 27152 ACTATATTCCACGATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTG 27093 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 ||| |||||| ||||||| ||||||||||| | ||||| |||||||| ||| ||||| Sbjct 27092 ATTAGATTTTCTATTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTG 27033 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC 37892 | || | ||| | |||||| |||| || | ||| Sbjct 27032 CGAGTCTAAAATTGCAAACCATAACTTTCTGGCATCAAC 26994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 38425 AATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATT 38484 |||||||||||||| ||||| |||| || ||| || || ||||||| ||||| || Sbjct 26261 AATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGGTTTCAATA 26202 Query 38485 ACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGT 38544 | |||| || || | |||||||| || | || || | ||| | |||||||||||| Sbjct 26201 GCCGCATCAATGTCTTCACCGTGAATTCCAACGGAAACTCGCATCAACATATGTTGTGGC 26142 Query 38545 CTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594 | ||| | || ||| ||| ||| || |||||||| || || || || Sbjct 26141 CGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 >seq31824 Length=40797 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || | |||||| || || || || ||||| | |||| || | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||||||||| || ||||| ||||||||||| ||||| || || |||||||||| Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 11772 CTACTACTCTTTCTCC--ATATACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAG 11828 | | | |||||| || || || | | ||| | | ||||||||| ||||| || | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||||| | || || || ||| ||||| ||||| || ||||| Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAA 11066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || ||||| ||||| ||||||||||| ||||| | ||| || || | ||||||||| Sbjct 11171 TAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTGAAAT 11230 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 || || ||| ||| || || | | ||| || || | | || | ||| | | ||| Sbjct 11231 CCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAGATTT 11290 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 || || || ||||| ||| || || |||||||| | | ||| || || | | || Sbjct 11291 TCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTTTCTT 11350 Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCT-AAATC 12114 || ||| ||| ||| |||||||| ||| ||||| Sbjct 11351 TCCTCTGGCTTTAGTTTTTCCCAATC-TCTGAAATC 11385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468333155787120