Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq32043 150 2e-31 seq31824 143 4e-29 seq31237 125 9e-24 seq2604 98.7 1e-15 >seq32043 Length=59240 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || ||||||||||| | ||||||||| || ||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || || |||||||||||| |||||||||| | || ||||||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 ||| |||||||||||| || || || ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 36648 ||| | | |||| | ||| | ||||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 118 bits (130), Expect = 1e-21 Identities = 138/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||||| ||| | ||||||||||||||||| | || || |||| ||| ||| Sbjct 34425 CCAGGCATTAAGCCTCTTTTTTTAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAA 34484 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 36334 |||||||| || || ||||| || || | ||| |||||| || ||| | ||| | Sbjct 34485 ATTCCTTCGACAGCAGCAAACGCGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCT 34544 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| | ||||||||| || || |||| ||||||||||| || || |||||||| Sbjct 34545 ATCCACCTCAAAGCCCAATCTGCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTG 34604 Query 36395 AAGAGA 36400 || ||| Sbjct 34605 AATAGA 34610 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 35855 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCT 35914 |||| ||| |||||| || |||||||| ||| ||||| ||||||||||| || | Sbjct 33922 ATAATTCCACTTTTTTTATACTCACCCACTTTTTTCTCGAAGAAATTAGTTTTGCCAGTT 33981 Query 35915 AATGATATATTTTCCATGAAATCGAATGGATT 35946 || |||||||||||||| ||||||||||| || Sbjct 33982 AAGGATATATTTTCCATAAAATCGAATGGGTT 34013 >seq31824 Length=40797 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 36409 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 |||| || ||| |||| || || || ||||| | ||||||||||||||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || |||| |||||||||||||| ||| |||| || || | |||||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 || ||||| | | |||||| ||||| || |||||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 36589 ATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 ||| || || | | |||| | ||| ||||||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||| ||||| ||| || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||| | ||||| ||||||||||||||||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 36302 ATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 36358 |||| ||| || ||| | ||| | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| | || ||||||||||| || || |||||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 36001 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 36060 |||||| ||||| |||||||||||||| | |||||||| || | | ||||| | ||| Sbjct 10596 AAATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGC 10655 Query 36061 CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTG-TTT 36119 | || | |||||||||||||||| || ||||| | | ||| | || ||| Sbjct 10656 ATCGGTCAAAAATTCTTGTTCAATAATAACAGCGTC----ACGAATGATTTCGGTGATTT 10711 Query 36120 CTT---CACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTA 36176 ||| |||||||| | | |||||||||||||||||||| || ||||| |||| Sbjct 10712 CTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATCCGTATGTA 10771 Query 36177 GACCCT 36182 ||||| Sbjct 10772 AACCCT 10777 >seq31237 Length=28651 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||| | ||| ||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 ||||| || | || |||||| ||||||||||| ||||| ||||| |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 || | | || ||||||||||| || ||||| | ||| || || || ||| |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAA 66643 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||||||||| |||||||| | || || | ||| ||||||| || || || |||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| | |||| ||||| || || ||||| || || ||||||||||||| || |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAA 65055 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 >seq2604 Length=35699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || ||||| || |||||||||| || |||||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 ||||| | ||| ||||| | || | || || ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 65910 GC 65911 || Sbjct 27019 GC 27018 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/161 (75%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 65177 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 || ||| ||||||||||| || || || | || ||||| || ||| ||||||||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 65237 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296 | ||| || |||||||| |||||||| || || || || || |||||||||| || || Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAA 27851 Query 65297 TAAACTA-TTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || | | ||||| | ||| ||| ||| |||||| |||| Sbjct 27850 GAAGCGAGTTTCTTAAACC--ATG--CTG-TTTTATTTTTT 27815 Score = 89.7 bits (98), Expect = 7e-13 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| |||||||||||||| | || | |||||| | |||| ||| ||||| |||| Sbjct 28383 TCCAGCCGTAAAAATGCATCGAGGATAAAGTCGAATAATTTGGATTTGCCATATGAATAT 28324 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | | ||| |||||| || || ||||| | || ||||||||||| | || || | Sbjct 28323 TTAAACTTTGCGATTGATCTATAAAAGCTCCTCGATCAGCAGCCATTTTCAGGACAGTTT 28264 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 65058 ||||| |||||||| | |||||| || ||||| Sbjct 28263 TTTGTTTGATTTCCCATACAGTTTTGTACAACTC 28230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657903582643320