Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq32043 150 3e-31 seq31824 138 2e-27 seq31237 120 4e-22 seq2604 105 1e-17 >seq32043 Length=59240 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | || ||||| ||||| | ||||||||| || ||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 ||||| |||||||||||| |||||||||| | || || |||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 ||| |||||||||||| || || || ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 50450 ||| ||| |||| | ||| | ||||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 113 bits (124), Expect = 6e-20 Identities = 137/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||||| ||| | ||||||||||||||||| | || || ||||| ||| || Sbjct 34425 CCAGGCATTAAGCCTCTTTTTTTAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAA 34484 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136 |||||||| || || ||||| || | | ||| |||||| || | || | ||| | Sbjct 34485 ATTCCTTCGACAGCAGCAAACGCGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCT 34544 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | ||||||||| || || |||| ||||||||||| ||||| || ||||| Sbjct 34545 ATCCACCTCAAAGCCCAATCTGCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTG 34604 Query 50197 AAGAGA 50202 || ||| Sbjct 34605 AATAGA 34610 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 49794 ATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 49853 |||||| |||||||| ||||| |||||||| | ||| | ||||||||| || | || Sbjct 34130 ATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCATGGATAC 34189 Query 49854 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 49913 ||| | ||| |||| | ||||||||||||||| || ||||| ||||| | | Sbjct 34190 TGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAATTTCTGT 34249 Query 49914 AACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970 || |||||| |||| ||| || | |||||||||||||| || || || ||||| Sbjct 34250 AA---TTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAAATC 34306 >seq31824 Length=40797 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 50211 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 |||| || ||| |||| ||||| || ||||| | ||||||||||||||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || |||| || ||||||||||| ||| |||| || || | |||||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || ||||| | | |||||| ||||| || |||||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 ||| || || | | |||| | || ||||||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 104 bits (114), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| ||| | ||| ||| || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| ||||||||||| |||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 50104 ACAAGTCTCTCTCCATAACTGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 50160 | || ||| || ||| | | || | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | || ||||||||||| ||||| || ||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 >seq31237 Length=28651 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| | ||| ||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 ||||| |||| || |||||| ||||||||||| || || ||||| |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || | | || ||||||||||| || ||||| | ||| || || || || |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||||||||||||||||| | || || | ||| ||||||| || || || |||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| | |||| ||||| || || ||||| || || ||||||||||||| || |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAA 78934 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||| ||| |||| ||||| |||||||| | || || | || ||||| || || || Sbjct 15322 TGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTCGCAACTAGCTTCCAA 15381 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATC 79409 || ||||||||||| ||||| ||||| | |||| || || | || | || || Sbjct 15382 AGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTGAGATTTTTCACTTTC 15441 Query 79410 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 |||||| | | | ||||||| || |||| ||| |||| |||||| || || || Sbjct 15442 GAATGGAAGCCTCATTAAAATAAACAAATCAGCTAGTCCCTGAATACCAATTCCAATGGG 15501 Query 79470 TCTATGTCTCTTATTAGAAATTTCAGC 79496 ||||||||| |||||| || |||| Sbjct 15502 TCTATGTCTGAGATTAGACTTTGCAGC 15528 >seq2604 Length=35699 Score = 105 bits (116), Expect = 1e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 || ||| ||||||||||| || || || | || ||||| || ||| ||||| ||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | ||||| |||||||| |||||||| || || || || || |||||||||| || || Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAA 27851 Query 79176 TAAACTA-TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 || | | ||||| | ||| | | | ||||| || || | ||| |||| ||||| | Sbjct 27850 GAAGCGAGTTTCTTAAACCATGCTGTTTTATTTTTTCCTTCAACGATGCCCAGTCCCATA 27791 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || | || ||||||||| | ||| || |||| ||| Sbjct 27790 AATTTGTTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 |||||||| || || ||||||| ||||||||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| | ||| ||||| | || | || || ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 79789 GC 79790 || Sbjct 27019 GC 27018 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 ||||| | ||||| ||||||||||| || || || || ||| || | || ||| || | Sbjct 26269 CCGCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGG 26210 Query 80399 TCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 | |||||||| | || || || || | |||||||| || | || ||||| ||||| Sbjct 26209 TTTCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATA 26151 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 || || || | ||| || | ||| ||||||||||| || || || || ||||| || Sbjct 26150 TGTTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||| |||||||| | || | |||||| | |||| ||| ||||| |||| Sbjct 28383 TCCAGCCGTAAAAATGCATCGAGGATAAAGTCGAATAATTTGGATTTGCCATATGAATAT 28324 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | | ||| |||||| || || ||||| | || ||||||||||| | || || | Sbjct 28323 TTAAACTTTGCGATTGATCTATAAAAGCTCCTCGATCAGCAGCCATTTTCAGGACAGTTT 28264 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 78937 ||||| |||||||| | |||||| || ||||| Sbjct 28263 TTTGTTTGATTTCCCATACAGTTTTGTACAACTC 28230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717975001125720