Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq32043 129 6e-25 seq31824 109 5e-19 >seq32043 Length=59240 Score = 129 bits (142), Expect = 6e-25 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||| || | ||| || ||||| ||||| || ||||| || |||| ||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAA--GTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| ||||| || ||| | ||| || ||||| || || |||||||||| Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | || ||||||||| | || |||| | | |||||| | |||||| || | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| |||||| | || ||| ||||| |||||||| |||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATA 34608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| |||||||| | ||| |||||||| || || || | || || || | ||||| Sbjct 34708 ATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGTGATCTGG 34767 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || || || || ||||||| || | ||||||||| | || | ||| | | | Sbjct 34768 AATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTCGACTAGA 34827 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 |||||||| || || ||||| ||||||||||||||| || | | | |||||| | | Sbjct 34828 TTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAATAAACTGT 34887 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAA 14366 || ||| || ||||| | ||| || ||||||| |||| Sbjct 34888 CTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGAA 34932 >seq31824 Length=40797 Score = 109 bits (120), Expect = 5e-19 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||| ||| | ||| || ||||| || || || ||||| | |||| || | Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAA--GTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||||||||| || ||||| || |||||||| ||||| || || || ||||| | Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | || ||| ||||| | || |||| | | ||||||||| ||||| || | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||| | || | | || ||| |||||||||||||| ||||| Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAA 11066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || || || | ||||||||||||||| || |||| || || || | || || Sbjct 11167 AATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTG 11226 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 ||| || ||||| |||| ||||| | || ||||| | || | |||| | | Sbjct 11227 AAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAG 11286 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 |||||| || || ||||| ||| ||| || ||||||||||| | || | ||| || | Sbjct 11287 ATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTT 11346 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 | || || || ||||||| |||||| ||||||| Sbjct 11347 TCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATCCT 11387 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 13516 ATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA-ATAACG 13574 ||| ||| |||||||| |||| ||| || |||| | ||| | | ||| | |||| Sbjct 10311 ATATAAATTAAAAATCGGCATCCAATTTGAATTCATTTT-GTCCTGTTGCGAATAAAACG 10369 Query 13575 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 || |||| | || || | |||||||| || ||||| || |||||||| | ||| ||| Sbjct 10370 CCAGTTTTCTTGTACTCGCCTACTCTTTTCTCGAAGAAATTGGTTTTACCATTCAGGGAT 10429 Query 13635 ATATTTTCCATAAAATCAAATGGATT 13660 ||||||||||||||||| || || || Sbjct 10430 ATATTTTCCATAAAATCGAACGGGTT 10455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479531773258200