Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq32043 134 1e-26 seq31824 104 2e-17 >seq32043 Length=59240 Score = 134 bits (148), Expect = 1e-26 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||| || | ||| || ||||| ||||| || ||||| || |||| ||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAA--GTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| |||||||| || | ||| || ||||| || || |||||||||| Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || | || ||||||||| | || |||| | | |||||| | |||||| || | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 |||| |||||| | || ||| |||||||| |||||||||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATA 34608 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||||||| | ||| |||||||| || || || | || || || | ||||| Sbjct 34708 ATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGTGATCTGG 34767 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || || || ||| ||||||| || | |||||| || | || | || | | Sbjct 34768 AATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTCGACTAGA 34827 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||| ||||| ||||| ||||||||||||||| || | | | |||||| | | Sbjct 34828 TTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAATAAACTGT 34887 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAA 14154 || ||| || ||||| | ||| || ||||||| |||| Sbjct 34888 CTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGAA 34932 >seq31824 Length=40797 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||| ||| | ||| || ||||| || || || ||||| | |||| || | Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAA--GTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||||||||| || || || ||| |||||||| ||||| || || || ||||| | Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || | || ||| ||||| | || |||| | | ||||||||| ||||| || | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| | || | | || ||| ||||| || ||||||||||| Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAA 11066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || || || | ||||||||||||||| || |||| || ||||| | || || Sbjct 11167 AATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTG 11226 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||| || |||||| |||| ||||| | || || || | || | ||| | ||| Sbjct 11227 AAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC-GACAA 11285 Query 14049 G-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 | ||||| || || ||||| ||| ||| || ||||||||||| | || | ||| || | Sbjct 11286 GATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATT 11345 Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | || || || ||||||| |||||| ||||||| Sbjct 11346 TTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATCCT 11387 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 13304 ATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA-ATAACG 13362 ||| ||| |||||||| |||| ||| || |||| | ||| | | ||| | |||| Sbjct 10311 ATATAAATTAAAAATCGGCATCCAATTTGAATTCATTTT-GTCCTGTTGCGAATAAAACG 10369 Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422 || |||| | || || | |||||||| || || || || |||||||| | ||| ||| Sbjct 10370 CCAGTTTTCTTGTACTCGCCTACTCTTTTCTCGAAGAAATTGGTTTTACCATTCAGGGAT 10429 Query 13423 ATATTTTCCATAAAATCGAATGGATT 13448 |||||||||||||||||||| || || Sbjct 10430 ATATTTTCCATAAAATCGAACGGGTT 10455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478393039233720