Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq20950 116 3e-21 seq23131 107 1e-18 seq11882 82.4 6e-11 >seq20950 Length=58994 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || | || ||| || ||||| | |||| |||||||| | ||| ||||| | Sbjct 38333 CCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTC 38274 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || ||||||||||| || || || || ||||| |||||||| | ||| Sbjct 38273 AATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGA 38214 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || |||| || | ||| || || | ||||| Sbjct 38213 ATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACT 38154 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || |||||||| |||||||||||||| || ||||||||||| Sbjct 38153 TCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 95.1 bits (104), Expect = 9e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | |||||||||| ||| || || |||| |||| ||||| || || || Sbjct 36930 CTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAA 36871 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||||||| || ||||| | || | |||||||| || |||| | |||| || Sbjct 36870 GATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTC-CTGAATTTTGGCTTTAACGT 36812 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | || ||| | |||||| || | || |||||||| || |||| |||||||| Sbjct 36811 TTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCA 36752 Query 43097 CAAAAATTTGCATTTT 43112 |||| || |||||||| Sbjct 36751 CAAAGATCTGCATTTT 36736 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | ||| || || || | ||| |||||| Sbjct 37649 CCACCACGTAGACGAAGCACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTT 37590 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| ||||||||||| || || ||||| ||||| || || || | || Sbjct 37589 AAAGTTCGGCCGTCTTCCAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37530 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || |||| || | ||| |||||| | ||||| Sbjct 37529 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGAC 37471 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || |||| |||||||| ||||||||||| Sbjct 37470 TTCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||| | ||| || ||||| | || ||||| || || || | || || Sbjct 38087 ACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCTTCT 38028 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||||||||||||||| ||||| || || |||| || | ||||||||| || | Sbjct 38027 AATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGG 37968 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | | | |||||| | ||| || || | || |||||||| Sbjct 37967 ATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTA 37908 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| ||||| |||||||||||||| Sbjct 37907 CCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || || || | ||| |||||| ||| || || |||| || Sbjct 37403 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGACCGTCTTCT 37344 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| ||||| || || || | || | |||||||| || ||| Sbjct 37343 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTC-CTG 37285 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 | | |||| || | ||| |||||| | ||||| || | || ||||| || Sbjct 37284 AATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACTTCCAGAGTAATAGTCTT 37225 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| ||||||||||| Sbjct 37224 ACCAGTTAATGTTTTCACGAAAATTTGCAT 37195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||||||| |||||| | | || ||||| ||||||||||| || Sbjct 37842 CTCTTTCTGAATATTGTAATCACTCAATGTTCTACCATCTTCCAACTGTTTGCCGGCGAA 37783 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||| |||| || ||||| | || | |||||||| || ||| | || || | Sbjct 37782 AATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTTGGATTTTAGCCTTAACATT 37723 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| | || || || | || |||||||| || ||||||||||| || Sbjct 37722 TTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTTTTACCAGTTAGAGTTTTAAC 37663 Query 43098 AAAAATTTGCAT 43109 || |||||||| Sbjct 37662 GAATATTTGCAT 37651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || || || | ||| |||||| ||| || || |||| || Sbjct 37175 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCT 37116 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| ||||| || || || | || | |||||||| || ||| Sbjct 37115 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTC-CTG 37057 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 | | |||| || | | | |||||| | ||| || || | || |||||||| Sbjct 37056 AATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTT 36997 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||| |||||||||||||| Sbjct 36996 ACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 >seq23131 Length=98978 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| || ||||| | |||||| || || | || | | || || Sbjct 82405 ACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTTCTACCATCTTCA 82346 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| ||||||||||| || || || ||||||| ||| | ||||||||| || Sbjct 82345 AGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGGATACCTTCTTTATCTTGA 82286 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||||| || |||||| || | || |||||||| Sbjct 82285 ATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACTTCGAGAGTGATAGTTTTA 82226 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||||||||||| || ||||| Sbjct 82225 CCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| ||| ||||| | ||| ||||| || || || | | || || Sbjct 83773 ACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGATAAGGTTCTACCATCTTCA 83714 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| || ||||| || || ||||||| || | ||||||||| || Sbjct 83713 AGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATACCTTCTTTATCTTGA 83654 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | | | ||||||| || || || || | ||| || |||||| Sbjct 83653 ATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGCGTAATGGTTTTT 83594 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| |||||| |||||||||||||| Sbjct 83593 CCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| || || | || | |||| || | |||||| ||||| || Sbjct 81931 TCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAG 81872 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || || ||||||| || | ||||||||| || ||| ||||||| | Sbjct 81871 ATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTT 81812 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| | || |||||| || | || || ||||| || || | ||||||||| Sbjct 81811 TCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACA 81752 Query 43099 AAAATTTGCATTTT 43112 || || |||||||| Sbjct 81751 AAGATCTGCATTTT 81738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| || ||||| | || || || || | || | |||| || Sbjct 82633 ACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCA 82574 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| ||||| || ||||| || || || |||| || | ||||||||| || Sbjct 82573 AGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGA 82514 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||||| || ||| || || | || || ||||| Sbjct 82513 ATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGATGGTTTTG 82454 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | ||||| || ||||||||||| Sbjct 82453 CCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||| || || || || | | | || ||||| ||||| ||||| || ||| Sbjct 7296 TTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGATC 7237 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 || || |||||||| | || | ||||||||| || || || ||| || | || Sbjct 7236 AAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTTCA 7177 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | | || || ||||| || | || || ||||| || || || ||||| || ||| Sbjct 7176 ATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGAAA 7117 Query 43102 ATTTGCAT 43109 |||||||| Sbjct 7116 ATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381217505393934