Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq32043 150 2e-31 seq31824 134 2e-26 seq31237 120 4e-22 seq2604 107 3e-18 >seq32043 Length=59240 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || ||||| ||||| | ||||||||| |||||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 ||||| |||||||||||| |||| ||||| | ||| ||||||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| |||||| ||||| || || || ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGA 42555 ||| | | |||| || ||| | | ||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || ||||| || || || | || ||||||| ||| | |||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTTTA 34448 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||| | || || |||| ||| || |||||||| || || ||||| || Sbjct 34449 AGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACGCG 34508 Query 42209 ATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | ||| |||||| || ||| | ||| ||||||| | ||||||||| || Sbjct 34509 ATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTGCT 34568 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || |||| ||||||||||| ||||| || ||||| || ||| Sbjct 34569 TTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGA 34610 >seq31824 Length=40797 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42316 TTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 |||| || ||| |||| || || || ||||| | ||||||||||| ||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || |||| || ||||||||||| ||| ||||||| || | || ||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || ||||| | | |||||||||||| || |||||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 ||| || || | | |||| || || ||| ||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||| ||||| ||| || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||| | ||||| |||||||||||| |||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 42265 |||| ||| || ||| | ||| | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | || ||||||||||| ||||| || ||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968 ||||| ||||| |||||||||||||| | |||||||| || | | ||||| | ||| Sbjct 10597 AATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGCA 10656 Query 41969 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-TTTC 42027 | || | |||||||||||||||| || ||||| | | ||| | || |||| Sbjct 10657 TCGGTCAAAAATTCTTGTTCAATAATAACAGCGTC----ACGAATGATTTCGGTGATTTC 10712 Query 42028 TT---CACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 || |||||||| | | |||||||||||||||||||| || ||||| Sbjct 10713 TTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATC 10763 >seq31237 Length=28651 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| ||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 ||||| |||| || |||||| ||||||||||| || || ||||| ||| || Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || | | || |||||||||||||| ||||| | ||| || || || || |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAA 72605 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||||||||| |||||||| | || || | ||| | ||||| || |||||||||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||| ||||| || || ||||| || || ||||||||||||| || |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAA 71017 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 >seq2604 Length=35699 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 |||||||| || |||||||||| || |||||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 ||||| | ||| ||||| | ||| | || || ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 71872 GC 71873 || Sbjct 27019 GC 27018 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 ||||| | ||||| ||||||||||| || || || || ||| || | || ||| || | Sbjct 26269 CCGCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGG 26210 Query 72482 TCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 | |||||||| | || || || || | || ||||| || | || ||||| |||||| Sbjct 26209 TTTCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATA 26151 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || || || | ||| || | ||| ||||||||||| || || || || ||||| || Sbjct 26150 TGTTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || ||| ||||||||||| || || || | | ||||| || ||| ||||||||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | || || |||||||| |||||||| || || || || || ||||||||||| | | Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTGCAAGAAG 27850 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 || ||||| | |||||| | ||||| || || | ||| |||| | ||| | Sbjct 27849 AAGCGAGTTTCTTAAACCATGCTGTTTTATTTTTTCCTTCAACGATGCCCAGTCCCATAA 27790 Query 71319 ATCCGATGGT 71328 || | |||| Sbjct 27789 ATTTGTTGGT 27780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670864678899480