Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq20950 118 9e-22 seq23131 98.7 8e-16 >seq20950 Length=58994 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| || |||||||||||||| || ||| | |||| ||||||||||| || Sbjct 36935 GTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGTTTTCCA 36876 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || | || |||||||| || | ||| |||||||| |||||| ||| Sbjct 36875 GCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGGCTTTA 36816 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| |||||| ||||| ||| | ||| || |||||||| ||||||||| Sbjct 36815 ACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGTTAAAGTT 36756 Query 19025 TTGACAAAAATTTGCATTTTAAA 19047 || ||||| || |||||||| || Sbjct 36755 TTCACAAAGATCTGCATTTTGAA 36733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || || | ||| || | || | || || |||||||||||||| ||||| Sbjct 38335 TTCCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCAC 38276 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || |||| | | || |||| |||||||| || | || | || || ||||| | Sbjct 38275 TCAATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCG 38216 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| ||||| |||||| | | | ||||| || || Sbjct 38215 GAATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGA 38156 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| |||||||| |||| |||||| || ||||||||||| Sbjct 38155 CTTCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || || |||||||| ||||| || ||| | |||| || | ||||| || Sbjct 37163 GTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCTAATTGTTTTCCG 37104 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| | || ||||| || || | || |||||||| |||||| ||| Sbjct 37103 GCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTC 37044 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| ||| ||||| ||| | ||||| |||||||| || || ||| Sbjct 37043 ACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTACCAGTCAACGTT 36984 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 36983 TTTACAAAAATTTGCAT 36967 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| || |||||||||||||| || |||| | | || |||| |||||| || Sbjct 37847 GTAGACTCTTTCTGAATATTGTAATCACTCAATGTTCTACCATCTTCCAACTGTTTGCCG 37788 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| | ||| |||||||| || | ||| ||||| || ||||| || Sbjct 37787 GCGAAAATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTTGGATTTTAGCCTTA 37728 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || ||| || || ||| | ||||| |||||||| |||| |||| Sbjct 37727 ACATTTTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTTTTACCAGTTAGAGTT 37668 Query 19025 TTGACAAAAATTTGCAT 19041 || || || |||||||| Sbjct 37667 TTAACGAATATTTGCAT 37651 >seq23131 Length=98978 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | || || | || || || ||||| ||||||||||| ||||| | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| || || | || | | |||||||| || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| ||| || | ||| || |||| ||| || | Sbjct 83671 ATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACT 83612 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||||| || ||||||||||| |||||||||||||| Sbjct 83611 TCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| |||| |||||| ||||| || || ||||| |||||||| | | ||| | || Sbjct 84233 TAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATC 84174 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| || || || || |||| || | |||||||| || | || || ||||| Sbjct 84173 TTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTC 84114 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| || || | ||| ||| || | |||||| ||||| || ||||| Sbjct 84113 TTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGT 84054 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || ||||| |||||||| ||||||||||| Sbjct 84053 TTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | |||| || || || || || |||||||| || || || | Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || || || ||||| || |||| || | ||||| || || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| ||||| || ||||| ||||| | | | |||||||| |||||| | Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || |||||||| || || || |||||||| ||||||||||| Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | || | ||||| || || || ||||| || ||||| |||| Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| || || ||||| || || | || || | |||||||| || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||| || ||| || | | | || || | |||||| | Sbjct 81847 ATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGACT 81788 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| ||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct 81787 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTT 81738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | |||| || | || || || ||||| || ||||| |||| Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || || ||||| || || |||| | | |||||||| || Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| ||||| | ||| || |||| |||||| | Sbjct 83899 ATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACT 83840 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || ||||||||||| || ||||| ||||| Sbjct 83839 TCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | |||| |||| || || || |||||||||||||| |||| Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || || ||||| || ||| |||| | | |||||||| || Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| ||| || | | | || |||| |||||| | Sbjct 82303 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACT 82244 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || || |||||||| || || ||||| ||||| || ||||| Sbjct 82243 TCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | |||| |||||||| || || ||||| || || || |||| Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| || || ||||| || || | || | | ||||| || || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| ||| || | | | || |||| |||||| | Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACT 82472 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || || |||||||| ||||||||||| Sbjct 82471 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| || ||||||||||| ||||||| | || | || || |||||| Sbjct 83539 TGCAAGGTAGATTCTTTTTGAATATTATAATCCGAAAGAGTACGACCATCTTCGAGCTGT 83480 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| || |||| || | || ||||| || | ||| ||||| || |||||| Sbjct 83479 TTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTG 83420 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| || |||| ||| || ||| | || || || || || || Sbjct 83419 GCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGAGTGATTGTCTTTCCAGTC 83360 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 |||||||| || || |||||||| Sbjct 83359 AAAGTTTTAACGAAGATTTGCAT 83337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414407463573862