Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20950 114 8e-21 seq23131 111 1e-19 seq11882 105 4e-18 >seq20950 Length=58994 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || || | ||||||||| | || || ||||| || ||||| ||||| Sbjct 37650 ACCACCACGTAGACGAAGCACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCT 37591 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | ||| |||||||| |||||| || ||||| ||||||||||| | || Sbjct 37590 TAAAGTTCGGCCGTCTTCCAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGG 37531 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| |||||||||| |||| || Sbjct 37530 GATTCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGAC 37471 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || || || || | ||||| |||||||||||||| Sbjct 37470 TTCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 104 bits (114), Expect = 1e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || |||||||| || |||||||||||| ||| | || ||| Sbjct 37859 ACTAAATGAAGGGTAGACTCTTTCTGAATATTGTAATCACTCAATGTTCTACCATCTTCC 37800 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 || || || || || ||||| | |||||| || | || ||||||||||| || | Sbjct 37799 AACTGTTTGCCGGCGAAAATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTTGG 37740 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| |||||||||| |||| ||| |||||||| || ||| Sbjct 37739 ATTTTAGCC---TTAACATTTTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTT 37683 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || |||||||| ||||| |||||||| Sbjct 37682 TTACCAGTTAGAGTTTTAACGAATATTTGCAT 37651 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || ||||| || ||||| ||||| |||| | | ||| || Sbjct 37403 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGACCGTCTTCT 37344 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| ||||| || ||||| ||||||||||| | || || |||||||| || | Sbjct 37343 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGA 37284 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| |||||||||| |||| || |||||||| || || || Sbjct 37283 ATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACTTCCAGAGTAATAGTCTTA 37224 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||||| |||||||||||||| Sbjct 37223 CCAGTTAATGTTTTCACGAAAATTTGCAT 37195 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || || || ||||| | || || || ||||| ||||| |||||| | Sbjct 38333 CCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTC 38274 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || |||||||| || ||| || ||||| ||||| || || | || Sbjct 38273 AATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGA 38214 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || || |||||| ||| |||||| || |||| || Sbjct 38213 ATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACT 38154 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || || ||||||||||||||||||||||| Sbjct 38153 TCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || ||||| || ||||| ||||| |||| | | ||| || Sbjct 37175 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCT 37116 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| ||||| || ||||| ||||||||||| | || || |||||||| || | Sbjct 37115 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGA 37056 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || | | || |||||| || | || |||| ||| || ||||| Sbjct 37055 ATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTA 36996 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||||| ||||||||||| Sbjct 36995 CCAGTCAACGTTTTTACAAAAATTTGCAT 36967 >seq23131 Length=98978 Score = 111 bits (122), Expect = 1e-19 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||||||||||| || || |||||||| || || || || || Sbjct 82652 ACCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82593 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| ||| || | ||| ||||| || || |||||||||||||| | Sbjct 82592 AA----GAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGG 82537 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || |||||||| || ||| ||| || ||| ||| |||||| | || | Sbjct 82536 GAGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCT 82477 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || ||||| || || | ||||| |||||||||||||| Sbjct 82476 CAACTTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 109 bits (120), Expect = 3e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| || || | || ||||| || || ||||||||||| ||||| ||||| || Sbjct 83792 ACCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGA 83733 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | || || | || ||||| || || ||||||||||| || | || Sbjct 83732 TAAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGG 83673 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||||||||| | |||| ||| Sbjct 83672 GATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83613 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || |||||||| || | |||||| || ||||||||||| Sbjct 83612 TTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 107 bits (118), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | |||||||| || ||||| |||||||| || || || || || Sbjct 83336 ACCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGA 83277 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| ||| || | |||||| || || || | |||||||||||| | Sbjct 83276 AA----GAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGG 83221 Query 33258 TGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || ||||||||||| || | | | ||| ||||| ||| ||| || ||| | | Sbjct 83220 GAGGAATGCCTTCTTTATCTTGGATTTTAGCC---TTTACATTTTCAATAGTATCGCTAG 83164 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| || ||||| || ||||| || || | ||||| |||||||||||||| Sbjct 83163 GCTCAACTTCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || |||||||| || || |||||||| ||||| ||||| || Sbjct 83564 ACCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTTTTGAATATTATAATCCGA 83505 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || | || || || || || | |||||| || || | || Sbjct 83504 AAGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGG 83445 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| ||| || ||| ||||||||| | |||| ||| Sbjct 83444 AATGCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83385 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||| || | |||||| ||||| |||||||| Sbjct 83384 TTCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGATTTGCAT 83337 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | |||||||||| || || |||||||| |||||||| || || Sbjct 82424 ACCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGA 82365 Query 33202 CAAATTGAGTTGGTC-ATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | ||| ||| ||| ||||| ||| |||||||||||||| || | Sbjct 82364 AA----GAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGG 82309 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || |||||||| || ||| ||| || ||| ||| |||||| | || | Sbjct 82308 GCGGGATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCT 82249 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || || | ||||| || || || ||||| Sbjct 82248 CGACTTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||||||||||| || || |||||||| || || || || || Sbjct 82880 ACCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82821 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| ||| || | ||| ||||| || || |||||||||||||| | Sbjct 82820 AA----GAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGG 82765 Query 33258 TGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || |||||||| || || | ||| || || ||| || |||||| | | Sbjct 82764 GAGGAATACCTTCTTTATCTTGAATTTTAGCC---TTGACATTTTCGATGGTGTCGCTAG 82708 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || || | || || || ||||| || | |||||| |||||||| ||||| Sbjct 82707 GCTCGACTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || ||||| |||||||| || ||||| || || ||||||||||| | ||||| | Sbjct 84235 CGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAA----GAGTTCG 84180 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || ||||||||||| || || || | ||||||||| || | || || ||||| Sbjct 84179 ACCATCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTC 84120 Query 33271 TTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || || | ||| || || ||| || ||||| | || | || || || Sbjct 84119 CTTGTCTTGAATTTTAGCC---TTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAG 84063 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || | ||||| |||||||||||||| Sbjct 84062 AGTGATGGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | |||||||| | || || |||||||| || ||||| || || Sbjct 84020 ACCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGA 83961 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || | ||| ||||| || |||||||||||||| || | Sbjct 83960 AA----GAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAG 83905 Query 33258 TGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || |||||||| || || | ||| ||||| ||| || |||||| | | Sbjct 83904 GCGGGATACCTTCTTTGTCCTGAATTTTGGCC---TTTACGTTTTCGATGGTGTCGCTAG 83848 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || || | || || ||||| || || | |||||| |||||||| ||||| Sbjct 83847 GCTCGACTTCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 >seq11882 Length=45137 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 ||||||| |||||||| || || || | | || ||||| || ||||| || | Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | |||||||| || |||| || || |||||||| || ||| ||||||||| ||| Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||||| || |||| || || || || || ||||| ||||| || |||||||||| Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 33360 AAATTTGCATGTTTAT 33375 |||||||||| | ||| Sbjct 7118 AAATTTGCATCTATAT 7103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318650467807254