Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq23131 132 3e-26 seq20950 132 3e-26 seq11882 113 3e-20 >seq23131 Length=98978 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | || || ||||||| || ||||||||||||||||||||| Sbjct 83792 ACCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGA 83733 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | |||||||| || || ||||| |||||||| || |||| Sbjct 83732 TAAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGG 83673 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||| || | | | || || || || || Sbjct 83672 GATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83613 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 83612 TTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || ||||| | |||| |||||||| || ||||| || Sbjct 82196 ACCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82137 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | | || | || || | ||||||||| || || ||||| ||||||||||| ||| Sbjct 82136 AAGAGTTCTGC-CGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAG 82078 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| |||||| |||||| ||| || | ||| ||||| ||||| | Sbjct 82077 GAATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGA 82018 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || |||||||| || || ||||| || || |||||||| Sbjct 82017 CTTCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 81969 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || | | |||||||| || ||| |||||||||||||| || || Sbjct 82424 ACCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGA 82365 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | ||||||||| ||||| || || |||||||| || | || Sbjct 82364 AAGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGG 82305 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||| || | ||| || || ||||| || Sbjct 82304 GATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGAC 82245 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || |||||||| || || || |||||||| || ||||| Sbjct 82244 TTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || | | |||||||| | |||| |||||||| || ||||| || Sbjct 82652 ACCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82593 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | | || | || || | ||||||||| || || ||||| ||||||||||| ||| Sbjct 82592 AAGAGTTCTGC-CGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAG 82534 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||||| |||||| ||| || | ||| || || ||||| | Sbjct 82533 GAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAA 82474 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| ||||| || || || || || |||||||| Sbjct 82473 CTTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || | | |||||||| | |||| |||||||| || ||||| || Sbjct 82880 ACCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82821 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | | || | || || | ||||||||| || || ||||| ||||||||||| ||| Sbjct 82820 AAGAGTTCTGC-CGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAG 82762 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||||| |||||| ||||| | | | || || ||||| | Sbjct 82761 GAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGA 82702 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||| || || || ||||| || || || || ||||| Sbjct 82701 CTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | |||||||||| || ||||||||||| ||||| ||| Sbjct 83336 ACCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGA 83277 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || || | ||| || || || || || | ||||||||||| |||| Sbjct 83276 AAGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 83217 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||| || || | ||| |||||| ||||| || Sbjct 83216 AATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAAC 83157 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| ||||| || || || || || |||||||| Sbjct 83156 TTCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGT 43952 |||||||||||| | | || ||||| | || |||||||| || || || | || Sbjct 81968 ACCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGA 81909 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || | || || | ||||||||| || || || | |||||||| || ||| Sbjct 81908 AAGAGTTCTGC-CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAG 81850 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||||| ||| || |||||| | ||| || || ||||| | Sbjct 81849 GAATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGA 81790 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| || || |||||||| || || || |||||||| || ||||| Sbjct 81789 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 81741 >seq20950 Length=58994 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 ||||| | |||||||| || || |||||||| |||||||| || ||| |||| ||| Sbjct 38552 AATCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCTTAAAGTACGA 38493 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 |||| ||||||||||| || || || || | ||||||||||| | || | ||||||| Sbjct 38492 CCATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGGGATACCTTCT 38433 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 || ||| ||| || ||| || | | | ||||| | || || || || | ||| Sbjct 38432 TTGTCTTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGACTTCTAATGTA 38373 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| || || || ||||| || |||||||| Sbjct 38372 ATTGTTTTACCAGTCAACGTTTTCACGAAAATTTGCAT 38335 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||||||||||| |||||||| |||| || |||| || Sbjct 38087 ACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCTTCT 38028 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || ||||||||||| | || | ||||||||||||| Sbjct 38027 AATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGG 37968 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | | | ||| || | ||||| || || | ||||| |||||| Sbjct 37967 ATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTA 37908 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| |||||||| Sbjct 37907 CCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||||| ||||||||||||||| |||| || | || || Sbjct 37632 CACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTTAAAGTTCGGCCGTCTTC 37573 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||||||||| || || || || ||||||||||| | || | |||||||| || Sbjct 37572 CAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTG 37513 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| || | ||| || || | ||| || || || | ||||| || || Sbjct 37512 AATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACTTCCAGAGTAATAGTCTT 37453 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| || ||||| || |||||||| Sbjct 37452 ACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 |||| ||| || ||||| || ||| || ||||||||||||||||| | ||| || Sbjct 38324 AATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTCAATGTTCGG 38265 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 |||| ||||||||||| || || || || || ||||| || || | || | ||| ||| Sbjct 38264 CCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGAATACCCTCT 38205 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 || ||| ||||| ||| || | ||| ||||| | || || || || | ||| Sbjct 38204 TTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACTTCTAGAGTA 38145 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||||| ||| || || || |||||||| Sbjct 38144 ATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || || ||||| ||||||||||||||| | || || | || || Sbjct 37175 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCT 37116 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || || || ||||||||||| | || | |||||||| || | Sbjct 37115 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGA 37056 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | | | ||| || | ||||| || || | ||||| |||||| Sbjct 37055 ATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTA 36996 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || ||||| |||||||| Sbjct 36995 CCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || || ||||| ||||||||||||||| | || || | || || Sbjct 37403 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGACCGTCTTCT 37344 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || || || ||||||||||| | || | |||||||| || | Sbjct 37343 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGA 37284 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| || || | ||| || || || | ||||| || ||| Sbjct 37283 ATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACTTCCAGAGTAATAGTCTTA 37224 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || ||||| || |||||||| Sbjct 37223 CCAGTTAATGTTTTCACGAAAATTTGCAT 37195 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || || |||||| |||||||| ||||| | ||| | |||| ||| Sbjct 37859 ACTAAATGAAGGGTAGACTCTTTCTGAATATTGTAATCACTCAATGTTCTACCATCTTCC 37800 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || || || || || | |||||| || | || | |||||||||||| Sbjct 37799 AACTGTTTGCCGGCGAAAATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTTGG 37740 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| || || | ||| || || | ||| || || || | ||||| |||||| Sbjct 37739 ATTTTAGCCTTAACATTTTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTTTTA 37680 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||| || || ||||||||||| Sbjct 37679 CCAGTTAGAGTTTTAACGAATATTTGCAT 37651 >seq11882 Length=45137 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 ||||||||||||| || || ||| | |||| ||||| |||||||| || || | Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| ||||| || ||| | || | ||||||||||||| |||||| ||||| || | Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| | ||||| || || || |||| || ||||||||||| || | || || || | Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 7118 AAATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354636110591004