Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq23131 96.9 3e-15 seq20950 86.0 5e-12 >seq23131 Length=98978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | | || |||||||| ||| || ||||| |||||||| || | Sbjct 84020 ACCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGA 83961 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || || || || || ||| || |||||||||| |||||||| ||| Sbjct 83960 AAGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGG 83901 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| |||||| |||||| ||| | | ||||| ||| ||| ||| Sbjct 83900 GATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGAC 83841 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| ||||| | |||||| || ||||||||||| Sbjct 83840 TTCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | | || |||||||| || || ||||| |||||||| || | Sbjct 83108 ACCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGA 83049 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || || || || || ||| || |||||||||| |||||||| ||| Sbjct 83048 AAGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGG 82989 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| || || |||||| ||||| | | ||||| ||| ||| ||| Sbjct 82988 GATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGAC 82929 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || | |||||| || ||||||||||| Sbjct 82928 TTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 >seq20950 Length=58994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||||||| || || ||| || ||||| |||||||| ||| ||| |||| ||| Sbjct 36947 ACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCC 36888 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || || || |||||||| || | | ||| |||||| | Sbjct 36887 AGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGA 36828 Query 48638 ATTTTCTGCTTGATAGACGCT----ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||||| |||| | ||| | || ||||||| | ||| || | || || || Sbjct 36827 ATTTTG-GCTTTA---ACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGT 36772 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || | |||||||||||| |||||||| Sbjct 36771 TTTACCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421083200150723