Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23462 194 3e-45 seq27364 187 4e-43 seq24826 179 6e-41 seq27928 156 7e-34 seq25169 150 3e-32 >seq23462 Length=22335 Score = 194 bits (214), Expect = 3e-45 Identities = 205/270 (76%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || |||||||||||||| ||||| || |||||||| Sbjct 5267 CGCTAAACGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATCACGAAACCAGCTAT 5208 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| || || ||| | || || ||| |||| ||||| | Sbjct 5207 CCGTCGGTTAGCTCGTCGTGGTGGTGTGAAACGTATATCCGGTTTGATCTACGAAGAAAC 5148 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || ||||| | ||| | | | ||| || | ||||| || ||| || || Sbjct 5147 TCGTGGAGTGTTGAAAGTTTTCTTAGAAAACGTCATTCGAGATGCCGTCACCTACACAGA 5088 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || ||||| ||| ||||||| | ||||| || |||||||||||||| Sbjct 5087 ACACGCGAAAAGAAAAACTGTTACCGCCATGGACGTTGTCTACGCTTTGAAACGTCAAGG 5028 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | |||||||||||| ||||||| Sbjct 5027 ACGTACCTTGTATGGTTTTGGAGGTTAATC 4998 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || |||||||||||||| ||||| || |||||||| Sbjct 10542 CGCTAAACGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATCACAAAACCAGCTAT 10601 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| || || ||| | || || ||| |||||||||| | Sbjct 10602 CCGTCGATTAGCTCGTCGTGGTGGTGTGAAACGTATATCCGGTTTGATCTATGAAGAAAC 10661 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||||||||| | || | | | || || | |||||| | ||||| || Sbjct 10662 ACGTGGTGTTTTGAAGGTGTTTTTGGAAAATGTAATTCGTGATGCGGTAACATATACTGA 10721 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || ||||| || | |||||| | || ||||| || ||||| ||||| Sbjct 10722 ACATGCCAAGAGAAAAACTGTTACTGCTATGGATGTAGTTTATGCTTTAAAACGCCAAGG 10781 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | || |||||||| Sbjct 10782 AAGAACTCTCTACGGTTTTGG 10802 >seq27364 Length=106906 Score = 187 bits (206), Expect = 4e-43 Identities = 205/270 (76%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| || || || || ||||| Sbjct 74517 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATTACGAAACCCGCTAT 74458 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| | |||||||| ||||| ||| ||||||| || |||||||||| | Sbjct 74457 TCGTCGTTTGGCCAGACGTGGTGGTGTCAAACGTATCTCTGGTTTAATCTATGAAGAAAC 74398 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || | | | ||| |||| |||||| || || ||||| Sbjct 74397 TCGTGGTGTATTGAAAGTGTTTTTGGAAAACGTAATCCGTGATGCAGTCACTTACACCGA 74338 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || ||||||||| ||||||| | || || || |||||||||||||| Sbjct 74337 ACACGCCAAAAGGAAAACTGTCACCGCCATGGACGTTGTATACGCTTTGAAACGTCAAGG 74278 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAAT 16700 | || ||| || ||||||||| |||||| Sbjct 74277 AAG-AACATTGTACGGTTTTGGAGGTTAAT 74249 >seq24826 Length=22091 Score = 179 bits (198), Expect = 6e-41 Identities = 205/274 (75%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | || |||||||||||||| ||||| || |||||||| Sbjct 18469 CGCCAAACGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATCACGAAACCAGCTAT 18528 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | |||||||| || || ||| | || || || | || ||||| | Sbjct 18529 CCGTCGTTTAGCCAGACGTGGTGGTGTGAAACGTATTTCCGGTTTAATTTACGAAGAAAC 18588 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || | | | |||||||| |||||| | ||| || || Sbjct 18589 TCGTGGTGTATTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTTACCTACACTGA 18648 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || |||||||| |||||||| |||| |||||||||||||||||||| Sbjct 18649 ACACGCTAAGAGAAAAACTGTCACTGCCATGGATGTCGTATATGCATTGAAACGTCAAGG 18708 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | | || ||||||||| |||||| |||| Sbjct 18709 AAGAACCCTCTACGGTTTTGGAGGTTAAT-TTCT 18741 >seq27928 Length=3823 Score = 156 bits (172), Expect = 7e-34 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || || ||||| || || || ||||||||| | || | |||||||| Sbjct 3349 CGTGATAACATTCAGGGTATCACTAAACCTGCAATCCGTCGTTTAGCAAGACGTGGTGGT 3290 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| ||||||| ||| | |||||||| | ||| | || |||| |||| || Sbjct 3289 GTCAAACGTATCTCTGGGTTGATTTATGAAGAAACTCGAGGAGTACTGAAAGTCTTTCTG 3230 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| ||||||| || || || || || || ||| | || |||||||| Sbjct 3229 GAAAATGTGATCCGTGATGCTGTCACTTACACTGAACATGCCAAAAGAAAAACTGTCACT 3170 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || || || || |||||||||||| | | | | |||||||||||| || Sbjct 3169 GCAATGGATGTAGTATACGCTTTAAAACGTCAAGGCAGAACGTTATATGGTTTTGGAGGT 3110 Query 16697 TAAT 16700 |||| Sbjct 3109 TAAT 3106 >seq25169 Length=27355 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || || ||||||||||| |||||||| || || || Sbjct 25402 GCCAAACGTCATCGTAAAGTTTTACGTGACAACATCCAAGGTATCACCAAACCCGCAATT 25343 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | || || | ||||| || || ||| ||||||||||| |||| ||||| | Sbjct 25342 CGTCGGTTAGCCCGAAGAGGTGGTGTGAAACGTATCTCTGGATTGATCTACGAAGAAACC 25283 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || || || | ||| | | | |||||||| ||||||| | || || || Sbjct 25282 CGTGGAGTCTTAAAAGTATTCTTGGAAAACGTTATCCGTGATGCTGTAACTTACACGGAA 25223 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || || || |||||||| | || || || ||||||||||||||| Sbjct 25222 CACGCCAAGAGGAAAACCGTAACAGCCATGGATGTTGTATACGCGTTGAAACGTCAAGGC 25163 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||||||| |||||| Sbjct 25162 AGAACTTTATACGGTTTTGGAGGTTAAT 25135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79045281132039