Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq16112 143 7e-29 seq31824 86.0 2e-11 >seq16112 Length=40353 Score = 143 bits (158), Expect = 7e-29 Identities = 247/353 (70%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 111487 AAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAA 111546 ||||||||||||| || |||| |||||||||||| | || ||||| || || |||||| Sbjct 33767 AAGGTGATCTCGGTCCGATTTATGGATTTCAATGGAGACATTTTGGAGCCGAATACAAAG 33708 Query 111547 CCATGCA---CGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 ||||| ||||| | | || | | | | | ||||||||| | ||| | || ||| Sbjct 33707 ATATGCATACCGACT-ACACGAATAAAGGCGTA--GATCAATTAAAAAATATTATAGATA 33651 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 ||||| || |||||| | | | || || | |||| ||||| || || | Sbjct 33650 CCATTAAAAATAACCCAGACGATAGAAGAATAATCCTATGTGCGTGGAATCCTCTTGATT 33591 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTAT-GTGCCAGTTTTATGTACACGACGGG 111722 || || |||||| | || || |||||| | | |||| |||| |||| | || Sbjct 33590 TGCCCAAGATGGCATTACCTCCTTGTCATTGTCTAGTGC-AGTTCTATGCGGTGAATGGA 33532 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 || ||||||| ||||||||| || || || || || ||| | ||||| || |||||| Sbjct 33531 GAACTATCATGCCTAATGTATCAACGTTCAGCCGACATGGGTTTAGGTGTACCTTTTAAT 33472 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAA 111835 ||||| |||||||| | || ||||| | ||||| ||| ||||||||| ||| Sbjct 33471 ATTGCCAGTTACGCCTTGCTCACTTGTATGATCGCACATGTTACAAATCACAA 33419 >seq31824 Length=40797 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/192 (71%), Gaps = 11/192 (6%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT----GAACAATGAACGTT-CATTCGCGG 22489 |||| || ||||| |||||| |||||||||| || ||| || | | |||| | || Sbjct 11033 AAGAGGAAAGCAGACTGGGCGTTGAAATGGATAGCCGATCAA--AATGCTACATTTGGGG 10976 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 || | |||| |||||||| | || ||||| ||||||||||||||| ||| || | Sbjct 10975 AAAGAATTATCGCATTTGCAGCCGTCGAAGGAATTTTCTTTTCTGGAAGTTTTGCAGCGA 10916 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAAT 22607 | ||||||||||| || | | ||||||| || | || ||||| ||||| || || Sbjct 10915 TATTTTGGCTAAAGAAGAGAGGCCTTATGCCTGGGTTGAC--TTTCAGCAATGAATTGAT 10858 Query 22608 TAGCCGAGATGA 22619 | ||||||| Sbjct 10857 TTCAAGAGATGA 10846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302807151489386