Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq20950 152 5e-32 seq23131 116 3e-21 seq11882 82.4 7e-11 >seq20950 Length=58994 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || |||||||||| ||| ||||| || ||||| |||||||||||| Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||| || || ||| |||| || || ||||| || ||||| Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| |||| | | | || | ||||||| | ||||| Sbjct 36845 ATGCCTTCTTTGTC-CTGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 36787 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||||| |||| |||||| || || |||||||| Sbjct 36786 TTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || |||||||| | || || || || ||||| || ||||||||| Sbjct 37193 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37134 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| |||| || || || ||| | ||||| || |||||||| || ||| Sbjct 37133 AAAGTTCGGCCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37074 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| || || | | ||| | ||| |||| | ||| | Sbjct 37073 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTAC 37015 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||||| || | |||||||| ||||| ||||| Sbjct 37014 TTCCAAAGTAATAGTTTTACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || |||||||| | || || || || ||||| || ||||||||| Sbjct 37421 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37362 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| |||| || || || ||| | ||||| || |||||||| || ||| Sbjct 37361 AAAGTTCGACCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37302 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| |||| | | | || | || |||| | |||| Sbjct 37301 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGAC 37243 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| |||| ||||| |||||||| ||||| Sbjct 37242 TTCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37195 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| || || | ||| | || || || ||||||||||| ||||| || Sbjct 38105 CCACCACGTAAACGAAGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTT 38046 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || ||||| || | ||||| || |||||||| || ||| Sbjct 38045 AAAGTTCGGCCATCTTCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGG 37986 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| || | | ||| | ||| |||| | ||| | Sbjct 37985 ATACCTTCTTTATCTTGGATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACT 37926 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||||| |||| |||||||| ||||| ||||| Sbjct 37925 TCCAAAGTAATAGTTTTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| || || | |||||||| | || || ||||||||||| || ||||| ||| Sbjct 38333 CCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTC 38274 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| ||||||| || || || || || || Sbjct 38273 AATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGA 38214 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| || | | || | ||||| | | |||| Sbjct 38213 ATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACT 38154 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||||||||||||||||||||| ||||| Sbjct 38153 TCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || || || || ||||| || |||||||| Sbjct 37649 CCACCACGTAGACGAAGCACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTT 37590 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | || || || ||| | ||||| || |||||||| || ||| Sbjct 37589 AAAGTTCGGCCGTCTTCCAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37530 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| |||| | | | || | || |||| | |||| Sbjct 37529 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGAC 37471 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| |||| ||||| |||||||| ||||| Sbjct 37470 TTCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || |||||||| | ||| ||||| || ||||| |||||||| ||| Sbjct 37877 CCCCCACGGAGACGAAGTACTAAATGAAGGGTAGACTCTTTCTGAATATTGTAATCACTC 37818 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || | ||| ||||| ||| | ||||| | ||||| || || || Sbjct 37817 AATGTTCTACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGCTGATCAGGTGGA 37758 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||| | | || | || |||| | || | Sbjct 37757 ATGCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATCGTGTCGGACGGTTCAACT 37698 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||||| ||||||||||| ||||| || ||||| Sbjct 37697 TCCAGAGTAATAGTTTTACCAGTTAGAGTTTTAACGAATATTTGCAT 37651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||||||||| || | || || ||||| | || ||| || ||||| ||||| |||| Sbjct 38563 AGCCACCGCGTAATCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGC 38504 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | || || || || | || || || ||| |||||| ||| |||||||| || | Sbjct 38503 TTAAAGTACGACCATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTG 38444 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 |||| ||||||||||| ||| | | |||| | | | || | ||||| | | ||| Sbjct 38443 GGATACCTTCTTTGTC-TTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCG 38385 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | |||| |||||||| || | ||||| |||||||| ||||| Sbjct 38384 ACTTCTAATGTAATTGTTTTACCAGTCAACGTTTTCACGAAAATTTGCAT 38335 >seq23131 Length=98978 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || ||||||| ||||| || ||||||||||| || ||| Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || || ||||| || ||| | || | ||| |||||||| ||||| Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||| | | || | ||||||| | | ||| | Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| ||||| | ||||| |||||||| ||||| Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || ||||| | ||| || || ||||| |||||||| || Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || || || || || ||| | |||||||| ||||| || || ||| Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||| | | || | || ||| | | ||||| Sbjct 83899 ATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACT 83840 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| ||||||| |||||| |||||||||||||| Sbjct 83839 TCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || ||||| | ||| || || ||||| |||||||| || Sbjct 83107 CCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAA 83048 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || || || || || ||| | |||||||| ||||| || || ||| Sbjct 83047 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 82988 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||||| ||||| | || | || ||| | | ||||| Sbjct 82987 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82928 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | |||||| |||||||||||||| Sbjct 82927 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || || |||||||||||||| | || || || || | |||||||| Sbjct 84217 GTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATCTTCCAATTGCTTGCCG 84158 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||| ||||| || ||||| |||||||| ||||| ||||| |||| Sbjct 84157 GCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGCCTTG 84098 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | | ||||| |||| || | |||||| || |||| ||| Sbjct 84097 ACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTTAAGGTT 84038 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||| ||||| Sbjct 84037 TTGACGAAAATTTGCAT 84021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131017 AAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGC 131076 ||||| || || ||||| | || || || ||||| ||||| || || | || | Sbjct 82870 AAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTG 82811 Query 131077 GAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCT 131136 ||| || || || || || ||| |||| ||||| |||||||| ||||| || |||||| Sbjct 82810 CCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCT 82751 Query 131137 TTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTA 131196 || || ||||| ||||| | || | || ||| | | ||||| || | || Sbjct 82750 TTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTG 82691 Query 131197 ACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || || || | |||||| |||||||||||||| Sbjct 82690 ATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 |||||||| ||||| || | ||| | || || | ||| || || ||| |||| Sbjct 7296 TTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGATC 7237 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 ||||| || || ||||| || || |||||||| || |||||||| || | | || Sbjct 7236 AAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTTCA 7177 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | | ||| | | |||| |||| ||| | |||||||| || || |||||||||||| Sbjct 7176 ATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGAAA 7117 Query 131227 ATCTGCAT 131234 || ||||| Sbjct 7116 ATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471819729064320