Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23131 111 1e-19 seq20950 86.0 5e-12 >seq23131 Length=98978 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| || | |||||| || || | || | || || ||||| ||| Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || ||||| ||| ||||| | | | ||||||| ||||| Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCT--TTCACATTTTCAATTGTGTCGCTAGGCTCAA 82474 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| ||||||| |||||||| ||||| ||||| Sbjct 82473 CTTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| || | |||||| || || | || | || || ||||| ||| Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||||| ||| || | | | ||||||| ||||| | Sbjct 82759 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82700 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || ||||| |||| ||||| || ||||||||||| Sbjct 82699 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| || || || ||||| ||||||||||| | | ||| || |||| Sbjct 81952 AGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCT 81893 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || | || || || || || || ||| | || ||||| || Sbjct 81892 TCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCT 81833 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||| | ||| || || | | | ||||| | ||||| ||| | |||||||| Sbjct 81832 TGAATCTTAGCT--TTGACGTTTTCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGG 81775 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| || |||| |||||| ||||| ||||||||||| Sbjct 81774 TTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTT 81738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| | || || || ||||| ||||| ||||||| | ||| | |||| Sbjct 83320 AGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAAAGAGTTCTACCGTCT 83261 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || || |||| || || || ||||| ||| | ||| ||||| || Sbjct 83260 TCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTTATCT 83201 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||| |||| ||||| ||| | ||||||||| Sbjct 83200 TGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACTTCGAGAGTGATGGTT 83141 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| |||||||| ||||| ||||| Sbjct 83140 TTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| || ||||| ||||||||||| | | ||| | | || Sbjct 84004 AGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83945 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || |||| | || || || || || | || |||||||| Sbjct 83944 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTCC 83885 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||||| ||||| ||| | |||||||||| Sbjct 83884 TGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACTTCTAAGGTGATGGTT 83825 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| | ||||| || ||||||||||| Sbjct 83824 TTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 >seq20950 Length=58994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | ||||| | ||| || || ||||| || || || ||||| ||| | Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||||| || || | || | || || || || ||| Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| || || | | | || ||| ||||| Sbjct 36845 ATGCCTTCTTTGTCCTGAATTTTGGCT--TTAACGTTTTCGATCGTATCGGACGGCTCGA 36788 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| |||||| ||||| || || | ||||| ||||| |||||||||||| Sbjct 36787 CTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCATTTTG 36735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404926446221770