Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq32043 150 2e-31 seq31824 143 3e-29 seq31237 125 9e-24 seq2604 98.7 1e-15 >seq32043 Length=59240 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || ||||||||||| | ||||||||| || ||||| | || ||||||| Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 || || ||||||||||| |||||||||| | || ||||||||| | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 ||| |||||||||||| || || || ||||||||||| || || |||||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33151 ||| | | |||| || ||| | ||||| | ||| || ||| ||| | ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATCCTGAGA 34931 Score = 113 bits (124), Expect = 6e-20 Identities = 137/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| ||| | ||||||||||||||||| | || || |||| ||| ||| Sbjct 34425 CCAGGCATTAAGCCTCTTTTTTTAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAA 34484 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 32837 |||||||| || || ||||| || || | ||| |||||| || || | ||| | Sbjct 34485 ATTCCTTCGACAGCAGCAAACGCGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCT 34544 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||| | ||||||||| || || |||| ||||||||||| || || |||||||| Sbjct 34545 ATCCACCTCAAAGCCCAATCTGCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTG 34604 Query 32898 AAGAGA 32903 || ||| Sbjct 34605 AATAGA 34610 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 32358 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCT 32417 |||| ||| |||||| || |||||||| ||| ||||| ||||||||||| || | Sbjct 33922 ATAATTCCACTTTTTTTATACTCACCCACTTTTTTCTCGAAGAAATTAGTTTTGCCAGTT 33981 Query 32418 AATGATATATTTTCCATGAAATCGAATGGATT 32449 || |||||||||||||| ||||||||||| || Sbjct 33982 AAGGATATATTTTCCATAAAATCGAATGGGTT 34013 >seq31824 Length=40797 Score = 143 bits (158), Expect = 3e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 32912 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 |||| || ||| |||| || || || ||||| | ||||||||||||||||| | || Sbjct 11152 TTCAGTAGGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATT 11211 Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031 || |||| |||||||||||||| || |||| || || | |||||| |||||| | | Sbjct 11212 CTCTATGGTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAA 11271 Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091 || ||||| | | |||||| ||||| || |||||| || || ||||| ||||| || Sbjct 11272 GAAACGTTCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACAC 11331 Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 ||| || || | | |||| ||||| ||||||| | |||||| ||| ||| Sbjct 11332 GTGTGAAATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| ||| ||||| ||| || || | || ||||| ||||| | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||||||||| | ||||| ||||||||||||||||||||| || || ||||| || Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 32805 ATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 32861 |||| ||| || ||| | || | | || |||||| || ||||| || || Sbjct 10966 ATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCT 11025 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| | || ||||||||||| || || |||||||| || Sbjct 11026 TTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 32504 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 32563 |||||| ||||| |||||||||||||| | |||||||| || | | ||||| | ||| Sbjct 10596 AAATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGC 10655 Query 32564 CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTG-TTT 32622 | || | |||||||||||||||| || ||||| | | ||| | || ||| Sbjct 10656 ATCGGTCAAAAATTCTTGTTCAATAATAACAGCGTC----ACGAATGATTTCGGTGATTT 10711 Query 32623 CTT---CACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTA 32679 ||| |||||||| | | |||||||||||||||||||| || ||||| |||| Sbjct 10712 CTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATCCGTATGTA 10771 Query 32680 GACCCT 32685 ||||| Sbjct 10772 AACCCT 10777 >seq31237 Length=28651 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| ||||| ||| | |||||||||||||| ||||| || || || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 ||||| || | || |||||| ||||||||||| ||||| ||||| |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || | | || ||||||||||| || ||||| | ||| || || || ||| |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAA 63654 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||||||||| |||||||| | || || | ||| ||||||| || || || |||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| | |||| ||||| || || ||||| || || ||||||||||||| ||| |||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 | || |||||||| | |||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 || |||||||||||| |||| ||| ||||| ||||||| ||| |||| | || ||||| Sbjct 17136 TTCTTTTGTTTCTTTATGTAAATTGGATACTGCTATTCGAGCCGCTAATGTTGCGTAATC 17195 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 |||||| || || | || || ||||| || || | | | |||| ||||||||| Sbjct 17196 CGGATGAACAGTGGTCATTGAAGCAGCGATTTCTGCAGCTAAATTATCCAGTTCTACCGT 17255 Query 63940 TGTTACACC 63948 ||| ||||| Sbjct 17256 TGTAACACC 17264 >seq2604 Length=35699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || ||||| || |||||||||| || |||||||||||||||||||||||| ||| | Sbjct 27139 ATTTCAGTACACAGATTACTACTTTTAATGGTTCCTAAATTTTGTTGATTAGATTTTCTA 27080 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| | ||| ||||| | || | || || ||||||||||| || || |||| ||| Sbjct 27079 TTACATGAATCTTTATACAACATATAAGGCGTTCCAGTTTCAATTTGCGAGTCTAAAATT 27020 Query 62921 GC 62922 || Sbjct 27019 GC 27018 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/161 (75%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 62188 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62247 || ||| ||||||||||| || || || | || ||||| || ||| ||||||||||| Sbjct 27969 AATTACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTC 27910 Query 62248 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 | ||| || |||||||| |||||||| || || || || || |||||||||| || || Sbjct 27909 AAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAA 27851 Query 62308 TAAACTA-TTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62347 || | | ||||| | ||| ||| ||| |||||| |||| Sbjct 27850 GAAGCGAGTTTCTTAAACC--ATG--CTG-TTTTATTTTTT 27815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530 ||||| | ||||| ||||||||||| ||||| || || ||| || | || ||| || | Sbjct 26269 CCGCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGG 26210 Query 63531 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 | |||||||| | || || || || | |||||||| || | || ||||| ||||| Sbjct 26209 TTTCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATA 26151 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 || || || | ||| || | ||| |||||||||| || || || || ||||| || Sbjct 26150 TGTTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| |||||||||||||| | || | |||||| | |||| ||| ||||| |||| Sbjct 28383 TCCAGCCGTAAAAATGCATCGAGGATAAAGTCGAATAATTTGGATTTGCCATATGAATAT 28324 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | | ||| |||||| || || ||||| | || ||||||||||| | | || | Sbjct 28323 TTAAACTTTGCGATTGATCTATAAAAGCTCCTCGATCAGCAGCCATTTTCAGGACAGTTT 28264 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62069 ||||| |||||||| | |||||| || ||||| Sbjct 28263 TTTGTTTGATTTCCCATACAGTTTTGTACAACTC 28230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633372820750800