Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq32043 159 4e-34 seq31824 156 5e-33 seq16772 136 4e-27 seq5327 134 2e-26 seq6435 131 2e-25 >seq32043 Length=59240 Score = 159 bits (176), Expect = 4e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| ||||||||| ||||| ||||| |||||||| || | | |||| ||| | Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | ||| ||||| |||| |||||| || ||||| || || ||||| | Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | || | ||| ||||| | || | | | ||| ||||| | ||||||||||| Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCT-ATCCACCTCAAAGCCCAATCT 34565 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||||| | |||| |||||| | ||||||||||| || ||||| |||||| Sbjct 34566 GCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAAATCTC 34617 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| ||||| || || | | |||||| || ||||| |||||||| || | Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 || ||||||||||||||| ||||||| || | | || ||||||||| | || | ||| Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || ||||||||||| || || ||||| || ||||||||||| || || | ||| || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||| ||| | || ||| ||| || || ||||| || Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTC 34916 >seq31824 Length=40797 Score = 156 bits (172), Expect = 5e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| |||| ||| ||||| ||||||||||| || || || || | || |||| |||| Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | |||||||| |||||||| || || ||||| ||||||||||||| Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | ||| | ||| |||| | || | | | ||| |||||||| || ||||| || Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCT-ATCCATTTCAACGCCCAGTCT 11022 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| |||| | |||||| | ||||| ||||| || |||| | |||| Sbjct 11023 GCTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAAGAAATC 11072 >seq16772 Length=79514 Score = 136 bits (150), Expect = 4e-27 Identities = 92/102 (90%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 38849 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 38790 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||||||||||||||||||| | || || || |||| Sbjct 38789 TGGGTTCGAACCCCACACCTGACAACATCTTTTTCGAGTTTT 38748 >seq5327 Length=48860 Score = 134 bits (148), Expect = 2e-26 Identities = 82/86 (95%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 47928 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGC 47869 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 47868 GTGGGTTCGAACCCCACACCTGACAA 47843 >seq6435 Length=10667 Score = 131 bits (144), Expect = 2e-25 Identities = 95/107 (89%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 4910 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 4969 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 ||||||||||||||||||||||| |||| | || | ||||||||| Sbjct 4970 TGGGTTCGAACCCCACACCTGAC-AATTGT--TTAAATTTTTTGTTG 5013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556633023050520