Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq23131 122 7e-23 seq20950 122 7e-23 seq11882 82.4 6e-11 >seq23131 Length=98978 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||||||||||||||| || | ||| || || ||| Sbjct 83109 ATGCAAATTTTCGTCAAAACCTTGACCGGCAAAACCATCACTCTCGAAGTTGAGCCTAGC 83168 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | ||||| ||||| || ||||||||| |||| ||| || Sbjct 83169 GATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGCATTCCTCCCGACCAG 83228 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || || ||| | ||||| || |||| | |||| ||||| Sbjct 83229 CAACGTCTCATTTTCGCCGGTAAGCAACTCGAAGACGGTAGAACTCTTTCCGACTATAAC 83288 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || ||||||| || | ||| || | || || Sbjct 83289 ATTCAAAAAGAATCGACTTTACATTTGGTTCTCCGTTTGAGAGGAGG 83335 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| | || ||||||||||| || | ||| || || || Sbjct 84021 ATGCAAATTTTCGTCAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGT 84080 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || || |||||| ||||| ||||| |||| ||||| Sbjct 84081 GACACTATCGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 84140 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || ||||| |||||||||||| | |||| | | ||||| || Sbjct 84141 CAACGTCTCATTTTCGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAAC 84200 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA 111416 || || |||||||||||| | || || || || || || || ||||| || Sbjct 84201 ATTCAGAAAGAATCTACATTGCACTTGGTTTTACGACTTCGTGGTGGTAA 84250 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | ||||| ||||||||||| | ||| ||||| ||| Sbjct 83565 ATGCAAATTTTTGTTAAAACTTTAACCGGAAAAACCATTACGCTTGAAGTTGAACCTAGC 83624 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| |||||| || |||||||| | || |||||| Sbjct 83625 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGTATCCCTCCCGATCAG 83684 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||| | |||||| || ||| | | ||||||||| Sbjct 83685 CAACGTTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTAGAACCTTATCAGATTATAAT 83744 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || |||||||||| | ||| || | || || Sbjct 83745 ATTCAAAAAGAGTCAACTTTACATTTAGTTCTACGTTTGAGAGGCGG 83791 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| |||||| |||| || ||||| || || | ||| || || ||| Sbjct 82197 ATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACTATCACTCTCGAAGTCGAGCCTAGC 82256 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 82257 GACACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCCGATCAG 82316 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || |||||| | |||||| || |||| | | || || ||| Sbjct 82317 CAACGTTTAATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACTCTTTCGGACTACAAT 82376 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || || ||||| || Sbjct 82377 ATTCAAAAAGAATCCACCCTGCATTTGGT 82405 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||||||||||||||| ||| | ||| || || ||| Sbjct 82425 ATGCAAATTTTCGTCAAAACCTTGACCGGCAAAACCATCACCCTTGAAGTTGAGCCTAGC 82484 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| || |||||||| |||| ||| || Sbjct 82485 GACACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCCGACCAG 82544 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || |||||| | ||||| | |||| | | || ||||| Sbjct 82545 CAACGTTTGATCTTCGCCGGAAAACAACTTGAAGACGGCAGAACTCTTTCGGACTATAAC 82604 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || | ||||| || Sbjct 82605 ATCCAAAAAGAATCCACGTTGCATTTGGT 82633 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| |||| || || || || || | ||| ||||| ||| Sbjct 83337 ATGCAAATCTTCGTTAAAACTTTGACTGGAAAGACAATCACTCTTGAAGTTGAACCTAGC 83396 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| |||||| || ||||||||| |||| |||||| Sbjct 83397 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 83456 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || ||||| | |||||| | ||| | | ||||||||| Sbjct 83457 CAACGTCTCATTTTCGCCGGTAAACAGCTCGAAGATGGTCGTACTCTTTCGGATTATAAT 83516 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || |||||||||||||| | |||||||| Sbjct 83517 ATTCAAAAAGAATCTACCTTGCATTTAGT 83545 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| | |||||||||||||| ||| | ||| || || ||| Sbjct 83793 ATGCAGATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCTTAGAAGTCGAGCCTAGC 83852 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || | | | | ||||| |||||| ||||||||||| ||||| | ||||| Sbjct 83853 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAAGG-TATCCCGCCTGATCA 83911 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | | |||| || || |||||| | |||||| || |||| | | || || || Sbjct 83912 GCAACGTTTAATTTTCGCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAA 83971 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || || ||||| || | ||| || | || || Sbjct 83972 CATCCAAAAAGAATCCACCCTTCATTTGGTCCTTCGTTTGAGAGGAGG 84019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || ||||| |||||| |||| || |||||||| ||| | ||| || || Sbjct 81737 AAAAATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTCGAGCC 81796 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || || | ||| | || ||| || ||| || |||||||| |||| ||| Sbjct 81797 TAGTGACACCATTGAAAACGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCCGA 81856 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| ||| | || || | || || |||||| | ||||| | |||| | | || || Sbjct 81857 TCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTTTCGGACTA 81916 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||||| || | |||||||| | ||| || | || || Sbjct 81917 CAACATCCAAAAAGAATCAACCTTGCATTTAGTTCTCCGTTTGAGAGGAGG 81967 >seq20950 Length=58994 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| |||||| |||| || ||||| ||||| ||||| || || | Sbjct 36967 ATGCAAATTTTTGTAAAAACGTTGACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37026 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| |||||| ||||||||||| | || || || Sbjct 37027 GACACTATCGAGAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37086 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || |||||||| ||||| |||| || |||||||||| Sbjct 37087 CAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGCCGAACTTTGAGCGATTATAAT 37146 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||||| || |||||||| | ||||| |||||||| Sbjct 37147 ATTCAGAAAGAATCTACTCTTCATTTAGTACTTCGTCTACGCGGTGG 37193 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | || || || || ||||| ||||| ||||| | Sbjct 37195 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37254 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||||||||| | || || || Sbjct 37255 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37314 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || |||||||| ||||| | |||| || |||||||||| Sbjct 37315 CAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTATAAT 37374 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||||| || |||||||| | ||||| |||||||| Sbjct 37375 ATTCAGAAAGAATCTACTCTTCATTTAGTACTTCGTCTACGCGGTGG 37421 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 ||| |||||||| || ||||| ||||| | || || ||||| || ||| ||||| || Sbjct 36732 TTTCAAAATGCAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGA 36791 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 || |||| | | | | || ||| |||||| |||||||||||| |||| Sbjct 36792 GCCGTCCGATACGATCGAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGCATTCCTCC 36851 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||| ||| | | || | || || ||||| ||||||| |||| || ||| Sbjct 36852 TGATCAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGA 36911 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || ||||| ||||| ||||||||||| | ||||| |||||||| Sbjct 36912 TTACAATATTCAGAAAGAGTCTACCCTACATTTAGTACTTCGTCTACGCGGTGG 36965 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | ||||| ||||| ||||| | ||| ||||| Sbjct 38107 ATGCAAATTTTCGTAAAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCT 38166 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | |||||| ||||| |||||||| || |||| |||||| Sbjct 38167 GATACGATTGAAAACGTAAAAGCTAAAATACAAGACAAAGAGGGTATTCCGCCTGATCAA 38226 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| ||| || ||||||||| Sbjct 38227 CAACGATTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAAT 38286 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| || || |||||||| || || | |||||||| Sbjct 38287 ATTCAAAAGGAATCCACTCTTCATTTAGTATTACGATTACGCGGTGG 38333 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | || || || || ||||| ||||| ||||| | Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||||||||| | || || || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37542 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || |||||||||||||| |||| | |||||||||| Sbjct 37543 CAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAAT 37602 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||||| || ||||| ||| | ||||| || ||||| Sbjct 37603 ATTCAGAAAGAATCTACTCTTCATTTGGTGCTTCGTCTACGTGGTGG 37649 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| |||||| | || || ||||| ||||| ||||| || || | Sbjct 37879 ATGCAAATTTTTGTAAAAACGTTAACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37938 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| ||||| || |||||||| | || ||| || Sbjct 37939 GACACTATCGAGAACGTGAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAG 37998 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| ||||||||||| |||||| |||| | |||||||| Sbjct 37999 CAACGATTAATTTTTGCCGGCAAACAATTAGAAGATGGCCGAACTTTAAGTGATTATAAC 38058 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| || ||| | || | ||| | || ||||| Sbjct 38059 ATTCAAAAAGAATCTACTCTTCATCTGGTACTTCGTTTACGTGGTGG 38105 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | || || ||||| || ||| | ||| ||||| Sbjct 7109 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCA 7168 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||||| ||| | |||||||| |||||| || |||||||| |||| |||||| Sbjct 7169 GATTCGATTGAAAATGTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 7228 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||| ||||||||| | || | | || || ||| Sbjct 7229 CAACGTTTGATCTTCGCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAAT 7288 Query 111367 ATACAAAAAG--AATCT 111381 || ||||||| ||||| Sbjct 7289 ATTCAAAAAGGTAATCT 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422871286756600