Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq20950 96.9 2e-15 seq19760 84.2 2e-11 >seq20950 Length=58994 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | ||||| ||||| || ||||| || ||| ||||| || || Sbjct 36735 CAAAATGCAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGA-GC 36793 Query 21890 CG-CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 || | || ||| | | | |||| |||||| || ||||| || | ||| Sbjct 36794 CGTCCGATACGATCGAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTG 36853 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 | || || || | ||||| ||||| ||||| || ||||| |||| || ||||| Sbjct 36854 ATCAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGATT 36913 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||| || ||||| || ||| | ||| | ||| |||| || || Sbjct 36914 ACAATATTCAGAAAGAGTCTACCCTACATTTAGTACTTCGTCTACGCGGTGG 36965 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||||||||| || || || ||||| ||||| ||| | | Sbjct 37195 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37254 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | |||| |||||| || ||||| || | ||||| || Sbjct 37255 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTG---AC 37311 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || || | || || || || |||||| ||||||| |||| || |||||| Sbjct 37312 CAGCAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTAT 37371 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||||||||| | ||| | ||| |||| || || Sbjct 37372 AATATTCAGAAAGAATCTACTCTTCATTTAGTACTTCGTCTACGCGGTGG 37421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| ||||||| |||| || ||||| ||||| ||||| ||| | | Sbjct 37651 ATGCAAATATTCGTTAAAACTCTAACTGGTAAAACTATTACTCTGGAAGTTGAACCGTCC 37710 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGTAAAC 21950 || ||| | | || ||||| ||||| |||||||| || | ||||| | Sbjct 37711 GACACGATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCACCTG---AT 37767 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | || || || |||||||| | |||||| | ||| || |||||| Sbjct 37768 CAGCAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTAGAACATTGAGTGATTAC 37827 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || ||||| |||||| | ||| | ||| | || || || Sbjct 37828 AATATTCAGAAAGAGTCTACCCTTCATTTAGTACTTCGTCTCCGTGGGGG 37877 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || ||||| ||||| ||||| || | | Sbjct 37879 ATGCAAATTTTTGTAAAAACGTTAACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37938 Query 21894 GAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 || || | | || | | |||| |||| | |||||||| ||| | || ||| Sbjct 37939 GACACTATCGA-GAACGTGAAAGCTAAAA-TCCAAGATAAAGAAGGTATCCCACCCGACC 37996 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | || || | || ||||| ||||||||| |||||||| |||| | ||||| | Sbjct 37997 AGCAACGATTAATTTTTGCCGGCAAACAATTAGAAGATGGCCGAACTTTAAGTGATTATA 38056 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||| || ||||||||||||||| ||||| | |||||||| || || Sbjct 38057 ACATTCAAAAAGAATCTACTCTTCATCTGGTACTTCGTTTACGTGGTGG 38105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||||||||| || || || ||||| ||||| ||| | | Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | |||| |||||| || ||||| || | ||||| || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTG---AC 37539 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || || | || || ||||| |||||| | ||||| |||| | |||||| Sbjct 37540 CAGCAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTAT 37599 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||||||||| |||| | ||| |||| || || Sbjct 37600 AATATTCAGAAAGAATCTACTCTTCATTTGGTGCTTCGTCTACGTGGTGG 37649 >seq19760 Length=34946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || || ||||| || ||||||||||||||| |||| | | |||||| Sbjct 26121 CAACAACGTCTGATTTTTGCCGGAAAACAACTAGAAGATGGGCGAACTCTTTCAGATTAC 26180 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || ||||| ||| | ||| | |||||||| ||| |||| ||| Sbjct 26181 AATATTCAAAAAGAATCAACTTTGCATTTAGTATTACGATTAAGAGGTGGA 26231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357981975688942