Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20287 111 2e-19 seq19088 111 2e-19 seq23131 109 6e-19 seq13996 102 9e-17 seq20950 100 3e-16 >seq20287 Length=9799 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 3348 TTTACAAAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 3289 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||||||| Sbjct 3288 GGATACTTACCACTATACTACCGAGGATTGA 3258 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3610 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3551 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 | ||||||||||||||||||| ||| Sbjct 3550 TTACCACTATACTACCGAGGACTGA 3526 >seq19088 Length=11881 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 11456 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11397 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT 57088 | ||||||||||||||||||||| |||||| Sbjct 11396 TTACCACTATACTACCGAGGATTACATATAT 11366 >seq23131 Length=98978 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||||||||| | || |||||||| || || ||||||||||| ||||| | Sbjct 83564 ACCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTTTTGAATATTATAATCCGA 83505 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| ||||| ||||| ||||| || || || || | || Sbjct 83504 AAGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGG 83445 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || || ||| | ||| |||| | ||| | | | | ||||||||| | ||| | Sbjct 83444 AATGC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAA 83386 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || | || || || ||||||||||| Sbjct 83385 CTTCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGATTTGCAT 83337 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||| | |||||||| || || || |||||||| || || || | Sbjct 83336 ACCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGA 83277 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || || |||||||| ||||| ||||| || |||||||||| || Sbjct 83276 AAGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 83217 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || || |||||| || | | | | || ||||| | || || Sbjct 83216 AATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAAC 83157 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||||||||| || | || || || || |||||||| Sbjct 83156 TTCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||| | || |||||||| || || ||||| || ||||| || | Sbjct 81968 ACCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGA 81909 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || || || || || ||||| ||||| || ||||| |||| || Sbjct 81908 AAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGG 81849 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || || || ||| | || | ||||| | | | ||||| || | || | Sbjct 81848 AATACCTTCTTTATCT-TGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGA 81790 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||| ||||||||||| || || | ||| || |||||||| |||||||| Sbjct 81789 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTT 81738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 || || ||||| |||||||| || || ||||| |||||||||| ||||| || | Sbjct 84235 CGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCA 84176 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||| || ||||| ||||| || ||||| || | || | | |||||| Sbjct 84175 TCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTG 84116 Query 42114 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| |||| | |||| | | | ||||| || | || || |||| ||||| Sbjct 84115 TCT-TGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGAT 84057 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| |||| || || || || |||||||| Sbjct 84056 GGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||||||||| | |||||||||| ||| || |||||||||||||| || | Sbjct 82424 ACCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGA 82365 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || || || || || || || || | || ||||| |||| || Sbjct 82364 AAGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGG 82305 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | | | | |||||||| | || | Sbjct 82304 GATAC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGA 82246 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 82245 CTTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||||||||| | ||||||||||| ||| || ||||| || || || || | Sbjct 82652 ACCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82593 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || || || || || ||||| || | || |||||||||| || Sbjct 82592 AAGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGG 82533 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | | | | |||||||| | || | Sbjct 82532 AATAC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAA 82474 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||||| || | || || || || |||||||| Sbjct 82473 CTTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| ||||| | || ||||| || || ||| ||||||||||| ||||| | Sbjct 83792 ACCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGA 83733 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || || ||||| || || ||||| || | || ||||| |||| || Sbjct 83732 TAAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGG 83673 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| |||| | ||| | | | | ||||||||| | ||| | Sbjct 83672 GATAC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAA 83614 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||| |||||||| || |||| || || ||||| |||||||| Sbjct 83613 CTTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||| | || |||||||| ||| || ||||| || || || || | Sbjct 82196 ACCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGA 82137 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || || || || || ||||| || | || |||||||| | || Sbjct 82136 AAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGG 82077 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| || ||| |||| | ||| | | | | || ||||| | || | Sbjct 82076 AATACCTTCCTTATCT-TGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGA 82018 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || || | |||||||| ||||||||||| Sbjct 82017 CTTCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 81969 >seq13996 Length=78181 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 62101 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 62042 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 62041 TTACCACTATACTACCGAGGA 62021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 61934 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 61875 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 61874 TACTACCGAGGA 61863 >seq20950 Length=58994 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||| | || ||||| | || ||| || |||||||||||||| Sbjct 36966 ACCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCT 36907 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || ||||| || |||||||| || | ||| ||||| || | || Sbjct 36906 CAAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGG 36847 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159 | || || |||||| ||| |||| | || | || | | | ||| ||| || || | Sbjct 36846 AATGCCTTCTTTGTCC-TGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGA 36788 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | ||||| ||||| || |||| || || |||||||| |||||||| Sbjct 36787 CTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCATTTT 36736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542990605594320