Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23131 122 2e-22 seq11882 122 2e-22 seq20950 113 1e-19 >seq23131 Length=98978 Score = 122 bits (134), Expect = 2e-22 Identities = 149/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| ||||||||| | | ||| || || ||||| || || |||||| Sbjct 81937 GTTGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 81878 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||||||||| ||||| || ||| ||| |||||| || |||||||| || Sbjct 81877 GCGAAGATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 81818 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | |||||| | | || || || | ||||| || ||||| || | ||| Sbjct 81817 ACGTTTTCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGGTTTTACCAGTCAACGTT 81758 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 |||||||| || || |||||| Sbjct 81757 TTCACAAAGATCTG---CATTTT 81738 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| ||| ||||| | | ||| || || ||||| || || |||||| Sbjct 82849 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82790 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||| |||||||| ||| ||| |||||| || ||||| || ||| Sbjct 82789 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTG 82730 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| |||||| | | || || || || ||||| ||||| || || | |||| Sbjct 82729 ACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTCTTTCCAGTCAAAGTT 82670 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 82669 TTAACGAAAATCTG 82656 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || || ||||||| ||||||||| | | ||| || |||||| Sbjct 84004 AGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83945 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||| || | ||| ||||| || || || |||||| ||| Sbjct 83944 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTCC 83885 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| ||| ||||| |||||| | | || || || || ||||| || Sbjct 83884 TGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACTTCTAAGGTGATGGTT 83825 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||| || ||||| || Sbjct 83824 TTGCCGGTTAAAGTTTTAACGAAAATCTG 83796 Score = 113 bits (124), Expect = 1e-19 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| ||||| | || || || | || || || |||||||| ||||| ||||| Sbjct 83762 AGTTGACTCTTTTTGAATATTATAATCTGATAAGGTTCTACCATCTTCAAGCTGTTTTCC 83703 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||||||| | ||| ||||| || ||| || |||||| || ||||| ||| |||| Sbjct 83702 GGCGAAGATCAAACGTTGCTGATCGGGAGGGATACCTTCTTTATCTTGAAT-TTTGGCTT 83644 Query 199552 -CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 ||| ||||| ||||| | | ||| || || | ||| || || || || || | || Sbjct 83643 TCACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGCGTAATGGTTTTTCCGGTTAAAG 83584 Query 199611 TTTTCACAAAAATTTG 199626 |||| ||||||||||| Sbjct 83583 TTTTAACAAAAATTTG 83568 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || || ||||||| ||||||||| | | ||| || |||||| Sbjct 83092 AGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83033 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||| || | ||| ||||| || || || |||||| || Sbjct 83032 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTATCT 82973 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || ||||| |||||| | | || || || || ||||| ||| Sbjct 82972 TGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTC 82913 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||| || ||||| || Sbjct 82912 TTTCCAGTCAAAGTTTTAACGAAAATCTG 82884 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| ||| ||||| | | ||| || || ||||| || || |||||| Sbjct 82621 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82562 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 |||||||| | ||| |||||||| ||| ||| |||||| || ||||| ||| || || Sbjct 82561 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAAT-TTTAGCTTT 82503 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||| | ||||| | | || || || | ||||| || || || || | || Sbjct 82502 CACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGATGGTTTTGCCGGTCAAGGT 82443 Query 199612 TTTCACAAAAATTTG 199626 ||| || |||||||| Sbjct 82442 TTTGACGAAAATTTG 82428 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| ||| ||||| | | ||| || || ||||| || || |||||| Sbjct 82165 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 82106 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 |||||||| | ||| |||||||| ||| ||| ||||| || ||||| ||| || || Sbjct 82105 GCGAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGAAT-TTTAGCTTT 82047 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||| | ||| || | | || || || || ||||| || ||||| || | || Sbjct 82046 CACATTTTCAATGGTATCGCTAGGCTCGACTTCTAAGGTGATAGTTTTACCAGTCAAGGT 81987 Query 199612 TTTCACAAAAATTTG 199626 || || || ||||| Sbjct 81986 CTTTACGAAGATTTG 81972 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || || ||||| | |||||||| | | ||| || |||||| Sbjct 82408 AGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTTCTACCATCT 82349 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || |||||||| || || | ||| ||||| || || || |||||| || Sbjct 82348 TCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGGATACCTTCTTTATCT 82289 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| ||| | ||||| | | || || || | ||||| || Sbjct 82288 TGAAT-TTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACTTCGAGAGTGATAGT 82230 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||||||||||| || || Sbjct 82229 TTTACCAGTCAACGTTTTCACAAAGATCTG 82200 >seq11882 Length=45137 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | |||||||| | || |||||||||||||||| ||| |||||||||||||| Sbjct 7296 TTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGATC 7237 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 | ||| || || ||||| ||| |||||| || ||||| || || || || ||| Sbjct 7236 AAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTTCA 7177 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | | |||| | ||| || || | ||||| || ||||||||||| ||||| || ||| Sbjct 7176 ATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGAAA 7117 Query 199622 ATTTG 199626 ||||| Sbjct 7116 ATTTG 7112 >seq20950 Length=58994 Score = 113 bits (124), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||| || || | ||||| || |||||| | || ||||||||||| Sbjct 36941 TGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGT 36882 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| |||||||| | || ||||| || ||| ||| |||||| |||||||| ||| Sbjct 36881 TTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAAT-TTT 36823 Query 199547 TGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| | || ||||| || || | | || || ||||| ||||| || ||||| || Sbjct 36822 GGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGT 36763 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | |||||||||||| || || |||||| Sbjct 36762 TAAAGTTTTCACAAAGATCTG---CATTTT 36736 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || ||||| ||| || || | |||||||| ||||| | || Sbjct 38550 TCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCTTAAAGTACGACC 38491 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || ||||||||||| ||||| |||||||| || || |||||| Sbjct 38490 ATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGGGATACCTTCTTT 38431 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| || || ||||| ||| || | || ||| || || || || || Sbjct 38430 GTCTTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGACTTCTAATGTAAT 38371 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | |||||||| |||||||| Sbjct 38370 TGTTTTACCAGTCAACGTTTTCACGAAAATTTG 38338 Score = 104 bits (114), Expect = 6e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || || | || || || |||||| | || ||||| | || Sbjct 37169 TGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCTAATTGT 37110 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||| || | || |||||||| || ||||||||| |||||||| ||| Sbjct 37109 TTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGAAT-TTT 37051 Query 199547 TGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| |||| |||| ||||| | || ||||| ||||| || || || ||||| || Sbjct 37050 AGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTACCAGT 36991 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 36990 CAACGTTTTTACAAAAATTTG 36970 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || ||||| | ||| || ||| ||||| | |||||| Sbjct 38090 AGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCT 38031 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || || ||||| || || | || |||||||| || || |||||| || Sbjct 38030 TCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCT 37971 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| |||| |||| |||| ||||| | || ||||| ||||| || || || Sbjct 37970 TGGAT-TTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGT 37912 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||||| ||||||||||| Sbjct 37911 TTTACCAGTTAACGTTTTTACAAAAATTTG 37882 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || || | || || || |||||| | || ||||| | || Sbjct 37397 TGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGACCGTCTTCTAATTGT 37338 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||| || | || |||||||| || ||||||||| |||||||| ||| Sbjct 37337 TTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGAAT-TTT 37279 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || ||| ||| | ||||| | | ||| || |||| || || |||||||| || Sbjct 37278 AGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACTTCCAGAGTAATAGTCTTACCAGT 37219 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||||| |||||||| Sbjct 37218 TAATGTTTTCACGAAAATTTG 37198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178427321277441