Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq23131 109 6e-19 >seq23131 Length=98978 Score = 109 bits (120), Expect = 6e-19 Identities = 174/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | || | |||||| || || |||||||| |||||||| || Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| ||||| || || |||||||| || | || ||||| |||| || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || ||||| |||| | | | ||||| || | || || Sbjct 81847 ATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGACT 81788 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT---TGCA--CA 46601 || | ||||||||||| || |||| |||||| |||||||| ||||||| |||| || Sbjct 81787 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTTTCTGCAATCA 81728 Query 46602 AACAACAC 46609 ||||||| Sbjct 81727 TACAACAC 81720 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||||||| | |||| |||||| || || |||||||| || ||||| || Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || || || || |||||||| ||||| || |||||||||| || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || || || || | | | | |||||||| | || || Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACT 82472 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| |||| ||||| || || |||||||| Sbjct 82471 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| ||| || || || ||||| || || |||||||| Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| ||||| ||||| |||||||| || | || |||||||||| || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || ||| || ||| | | | | || ||||| | || || Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| |||| ||||| || || |||||||| Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||||||| | |||| |||||| || || |||||||| || ||||| || Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || || || || |||||||| ||||| || |||||||||| || Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || || || ||||| | | | |||||||| | || || Sbjct 82759 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82700 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || || |||| |||||||| || || ||||| Sbjct 82699 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| ||| | || || |||||||| |||||||| || Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||| || || |||||||| || || || ||||| || | ||| Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| || || ||| | | | | |||||||| | || || Sbjct 83899 ATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACT 83840 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || | |||||||| || || ||||| Sbjct 83839 TCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 || || |||| ||||||||| || || || || ||||| || || ||||| || | Sbjct 84235 CGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCA 84176 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||||||||||| || | || ||||| || | || | | |||||| Sbjct 84175 TCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTG 84116 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || || ||||| | | | ||||| || | || || || | |||||| Sbjct 84115 TCTTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATG 84056 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || | ||||| || || |||||||| Sbjct 84055 GTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565007196297960