Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq20950 122 6e-23 seq23131 107 1e-18 seq11882 82.4 5e-11 >seq20950 Length=58994 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| ||||||| ||| | ||| ||||||||| || |||||||| Sbjct 38105 CCACCACGTAAACGAAGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTT 38046 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || |||||||| ||| |||||||||| || ||||| || | || Sbjct 38045 AAAGTTCGGCCATCTTCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGG 37986 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||| | || | | ||||| | || || Sbjct 37985 ATACCTTCTTTATCTTGGATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACT 37926 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| |||||||| ||||| |||||||| || || ||||| Sbjct 37925 TCCAAAGTAATAGTTTTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| ||||| | ||| |||||| || |||||||||||| | Sbjct 37193 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37134 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || || |||||||| ||| | |||||||| || ||||| || | || Sbjct 37133 AAAGTTCGGCCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37074 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||| | || | | ||||| | || || Sbjct 37073 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACT 37014 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| |||||||| || || |||||||| || || ||||| Sbjct 37013 TCCAAAGTAATAGTTTTACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| ||||| | ||| |||||| || |||||||||||| | Sbjct 37421 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37362 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || || |||||||| ||| | |||||||| || ||||| || | || Sbjct 37361 AAAGTTCGACCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37302 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||||| | | | ||||| | ||| || Sbjct 37301 ATTCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACT 37242 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 37241 TCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37195 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| |||||| || |||||||||||| Sbjct 37649 CCACCACGTAGACGAAGCACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTT 37590 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || ||||||||||| || | |||||||| || ||||| || | || Sbjct 37589 AAAGTTCGGCCGTCTTCCAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37530 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||||| | | | ||||| | ||| || Sbjct 37529 ATTCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATCGTGTCGGACGGTTCGACT 37470 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 37469 TCCAGAGTAATAGTCTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || || || | ||| ||||| | |||| ||| ||||| ||||||||||| | Sbjct 38333 CCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTC 38274 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||||||||| || | || ||||| || || ||||| | || Sbjct 38273 AATGTTCGGCCATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGA 38214 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| |||||| ||| | | | | || || | ||| || Sbjct 38213 ATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACT 38154 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| |||||||| |||| |||||||||||| || ||||| Sbjct 38153 TCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || || | || |||||||| | ||| || ||||| || ||||| || ||| Sbjct 38562 GCCACCGCGTAATCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCT 38503 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| ||||||||||| ||| | || |||| ||| ||||| || | || Sbjct 38502 TAAAGTACGACCATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGG 38443 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| || || ||||| | | | || || | ||| || Sbjct 38442 GATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGAC 38383 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||||||||| || || ||||| ||||| || ||||| Sbjct 38382 TTCTAATGTAATTGTTTTACCAGTCAACGTTTTCACGAAAATTTGCAT 38335 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| ||||| | || ||||| || ||||| |||||| | Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || |||| ||||| || | || || || || |||||||| | || Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||||| | | | || || | || || Sbjct 36845 ATGCCTTCTTTGTCCTGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 36786 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| ||||||||||| || ||||||||||| Sbjct 36785 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 >seq23131 Length=98978 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || |||||||||| ||| ||||||||| ||||| || || | Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCG-- 82366 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || | |||||| ||| ||||||||||||| |||||||| | Sbjct 82365 --AAAGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGG 82308 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTT 39666 || | |||||||| || ||||| ||| | | | | ||||| || || Sbjct 82307 CGGGATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGC-- 82250 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 82249 TCGACTTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 105 bits (116), Expect = 5e-18 Identities = 167/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || |||||||| | ||| ||||||||| || || || || | Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCG-- 83962 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || | |||||| ||| | ||||||||||| |||||||| | Sbjct 83961 --AAAGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGG 83904 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||||||||| | | |||| | |||| | ||| | ||| || || Sbjct 83903 CGGGATACCTTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGC- 83846 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || ||||| || ||||||||||| ||||| |||||||| Sbjct 83845 -TCGACTTCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || || |||||||| || ||||||||| ||||||||||| | Sbjct 83563 CCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTTTTGAATATTATAATCCGAA 83504 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | ||||| ||| | ||||| | ||| || ||||| | || Sbjct 83503 AGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 83444 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||| || ||||| ||| || ||| | ||| || | ||| | Sbjct 83443 ATGCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGG--TTCAA 83386 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| ||||| || || || |||||||| |||||||| ||||| Sbjct 83385 CTTCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGATTTGCAT 83337 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| |||||| || || ||||| ||||| |||||||| ||||||||||| | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| || | ||||| ||| | || || ||||| |||||||| | || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || ||||| ||| || ||| | ||| || | ||| | Sbjct 83671 ATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGG--TTCAA 83614 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||||| ||||| || ||||||||||| || || || ||||| Sbjct 83613 CTTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || |||||||| | || ||||||||| || || || || | Sbjct 83107 CCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCG-- 83050 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || | |||||| ||| | ||||||||||| |||||||| | Sbjct 83049 --AAAGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGG 82992 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTT 39666 || | |||||||| || ||||| || || ||| | ||| || || Sbjct 82991 CGGGATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGC-- 82934 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || || || |||||||| ||||| |||||||| Sbjct 82933 TCGACTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || ||||||||||| ||| ||||||||| || ||||| || | Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCG-- 82822 Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | ||| | || || | |||||| ||| | || || ||||| ||||| || | Sbjct 82821 --AAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGG 82764 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTT 39666 || | |||||||| || ||||| || || ||| | ||| || || Sbjct 82763 AGGAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGC-- 82706 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || || || |||||||| ||||| |||||||| Sbjct 82705 TCGACTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| ||||| || || | || | | |||| ||||| ||||| ||| | || | Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | ||||| || ||||||| || | |||||||| || ||||| ||||| | | Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | | |||| ||| || || | || |||||||||||||| | |||||||||| Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 39710 AGATCTGCAT 39719 | || ||||| Sbjct 7118 AAATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347231064987059