Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq23131 118 7e-22 seq11882 91.5 1e-13 seq20950 87.8 1e-12 >seq23131 Length=98978 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||| || || | || |||||| || ||||| ||||||||| Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || || || ||||||||||| || || || |||||||| || | || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||||||| | | || | |||| | ||| || Sbjct 81847 ATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGACT 81788 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| ||| |||||||| || || | || ||||||||||||||||| || Sbjct 81787 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTT 81738 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||| |||| ||| |||||| || ||||| ||||||||| Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| |||| || || ||||||||||| || |||| |||||||| || |||| Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||| || || ||| | | || | || | | ||| || Sbjct 83899 ATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACT 83840 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| || || | ||| || || || ||||||||| Sbjct 83839 TCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCATA 83792 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || | | ||||| || | ||| |||||| ||||| || ||||||||| Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| |||| || || |||||||||||||| |||| |||||||| || |||| Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||| || | | || | || | | ||| || Sbjct 82303 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACT 82244 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || ||||| || || | || |||||||||||||||||| Sbjct 82243 TCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATA 82196 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||||||||| | ||| ||||||||||||||| || || ||||| |||| |||| Sbjct 84232 AAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATCT 84173 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| || || ||||| || || || |||||||| || | || | || |||||||| Sbjct 84172 TCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCT 84113 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| | | || | |||| | ||| || |||| || |||||| Sbjct 84112 TGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGTT 84053 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | || || || || || |||||| Sbjct 84052 TTGCCAGTTAAGGTTTTGACGAAAATTTGCATA 84020 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||| || || | ||| |||||| || ||||||||||||||| Sbjct 82195 CCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82136 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || || || ||||||||||| || || | |||||||||||| | || Sbjct 82135 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGGA 82076 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||| || ||| || | | || | || | | ||| || Sbjct 82075 ATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGACT 82016 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || ||||| || || | ||||| || ||||| |||||| Sbjct 82015 TCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCATA 81968 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || | | |||||| || | ||| |||||| || ||||||||||||||| Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || || || ||||||||||| || || | ||||||||||| | || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||| || | | || | || | | |||||| Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACT 82472 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| || || | || || || || || |||||| Sbjct 82471 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCATA 82424 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||| |||| || |||||| || ||||| ||||||||| Sbjct 83107 CCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAA 83048 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| |||| || || ||||||||||| || |||| |||||||| || |||| Sbjct 83047 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 82988 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||||| | | || | || | | ||| || Sbjct 82987 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82928 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || ||||| || | ||| || || || ||||||||| Sbjct 82927 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 82880 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || | | |||||| || | ||| |||||| || ||||||||||||||| Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | || || || ||||||||||| || || | ||||||||||| | || Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||||| | | || | || | | ||| || Sbjct 82759 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82700 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || ||||| || | ||| || || || ||||||||| Sbjct 82699 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 82652 >seq11882 Length=45137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| ||||| || |||||||| | | | | | |||| |||| |||||||||||| || | Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||||| || || | || | || || || || ||| |||||||| || | Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | ||||| || | || || |||| ||| || ||||| |||||||| || || || | Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 34972 AGATCTGCAT 34981 | || ||||| Sbjct 7118 AAATTTGCAT 7109 >seq20950 Length=58994 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||| || || || | || | |||| | || |||||||||||||| || || Sbjct 36929 TCTTTCTGAATATTGTAATCGCTCAAAG-TTCGGCCGTCTTCCAGCTGTTTTCCAGCGAA 36871 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||||||||| || | || | || || ||||| ||| || ||| ||| Sbjct 36870 GATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGGCTTTAACGTT 36811 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | ||| || || | ||| || ||||| || || | ||| ||||| Sbjct 36810 TTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCAC 36751 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 36750 AAAGATCTGCATTTT 36736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324504132366744